Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1491 ATGGCCAGCGCTCAGCTCACAGCAATAGCGTCATCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCCGCTGTTCAGTTTGCTTCCACGGGCAGAATTAGAATTGGCAATCTCTCCCAAAGGTCCTTCCGGGGCTTGGTTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACTGCGATAAAGCCTCTGGGAGATAGAGTGCTAATAAAAATTAAGGAAGCAGAGGAGAAAACTGAGGGTGGGATTTTGCTTCCATCAACTGCTCAAACGAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGGGAAGGAAAGACAGTTGGGAAGAACAATGTAGAGATTAGTGTGAAGACTGGTGCACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGACTTCAATGGTACAAAGCATCTTATTGTGAAGGATGATGACATTGTTGGTATCCTCGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTTGCTGAAGCTGAGGAAAAAACCTCTGGCGGTTTGTTGCTTACAGAGGCAACCAAGGACAAACCTTCGATTGGAACAGTGATAGCTGTTGGGCCGGGGCATCTGGACGAGGAAGGCAACAGAAAACCGTTGTCCGTGACTCCGGGGAACACAGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTACCTTGAGAGTCTCAGATGTCATGGCTGTTCTCTCCTAG 762 0.4764 MASAQLTAIASSISTASFEGLRPSAVQFASTGRIRIGNLSQRSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPSTAQTKPQGGEVVAVGEGKTVGKNNVEISVKTGAQVVYSKYAGTEVDFNGTKHLIVKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTSGGLLLTEATKDKPSIGTVIAVGPGHLDEEGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSDYITLRVSDVMAVLS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1491 253 PANTHER GROES CHAPERONIN 1 253 - -
Gso15g1491 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Gso15g1491 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gso15g1491 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Gso15g1491 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Gso15g1491 253 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Gso15g1491 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Gso15g1491 253 Gene3D GroES chaperonin 54 154 IPR037124 GO:0006457
Gso15g1491 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Gso15g1491 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1491 Gso-Chr15 17504536 17508037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1491 1 253 Calmodulin-binding Proteins AT5G20720 75.391 9.24e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1491 K04078 - gmx:100814751 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1491 15 17504536 17508037 Gso9g0609 9 7341606 7345097 GST
Gso13g0823 13 22533571 22535960 Gso15g1491 15 17504536 17508037 PCT
Gso17g0389 17 3573701 3575996 Gso15g1491 15 17504536 17508037 PCT
Gso15g1491 15 17504536 17508037 Gso13g0823 13 22533571 22535960 PCT
Gso15g1491 15 17504536 17508037 Gso17g0389 17 3573701 3575996 PCT