Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1489 ATGGTGAAGTCGAAGAGCGTGGAGAAACCTGCGGAGGAACAACAACGAGGTGGTGTTTCAGCGTACAGAGGAGTACGGAAGAGGAAGTGGGGGAAGTACGTGTCGGAAATTAGGCTGCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAAAAGGCGGCGCGTGCATTCGACGCGGCCATGTTCTGCTTACGTGGCAGCGGTGCCAACTTTAATTTCCCGAGCGACCGGCCCAACATCGCTGGCGGGAGGAACATGACGCCCTCGCAGATTCAGATCGCCGCGGCGCGTTTCGCCAATTCGGAGCCCCGAAAGGAGTGTTCGGGTAAACCCGTGGAGTCTTTGACTTCGATTGAGGAAACGACGTCGTTTCCAGTAAATTCGGATACGGATACATCTTCTCCTCTATCAGTAGTGACGATCCAAAACGACACCGAAGTAGCAACCGGGTCGTTTCCGGGTATATTTTCGGGTTTCGGGTCGGGTAATTTCGTCCCCGAATTCTCCGATTTTCCGAGCTTCGATGATTTCGGCCACGATTTCTTCGTGCATGAGCTTCCGGGTTTCGATTACGGAGAAGAGAACTTGGATGGGTTGATAATTCAGGACTCGTTCCTGTGGAATTTCTAA 642 0.5312 MVKSKSVEKPAEEQQRGGVSAYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGANFNFPSDRPNIAGGRNMTPSQIQIAAARFANSEPRKECSGKPVESLTSIEETTSFPVNSDTDTSSPLSVVTIQNDTEVATGSFPGIFSGFGSGNFVPEFSDFPSFDDFGHDFFVHELPGFDYGEENLDGLIIQDSFLWNF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1489 213 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Gso15g1489 213 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Gso15g1489 213 MobiDBLite consensus disorder prediction 1 21 - -
Gso15g1489 213 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Gso15g1489 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 213 - -
Gso15g1489 213 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Gso15g1489 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 213 - -
Gso15g1489 213 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Gso15g1489 213 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Gso15g1489 213 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gso15g1489 213 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1489 Gso-Chr15 17429389 17430495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1489 20 213 AP2-EREBP Transcription Factor Family AT1G19210 49.261 4.20e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g1489 AP2 4.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1489 - - gmx:100813688 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1489 15 17429389 17430495 Gso9g0608 9 7313438 7314566 GST