Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1472 ATGACCCTTATGAAAACCCTATGGAAATCAATCTTCCCCGGTTGTTACAAGGGTGAATATCCCTCTCCAAAGCCAAAGAAAGTGGTGGCTACAAAGCCAAATTCTTCACACAGAATTTCTGTGACGGATTTGAGTTATCCAAGCACGACTCTTTCGGAGGATCTGTCAATTTCTCTAGCGGGAACCAACCTCCATGTTTTCTCACTCGCTGAGCTCAAGATTATTACTCAACAATTCTCTTCTAGCAATTTTCTTGGAGAAGGTGGGTTCGGACCCGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCATGGCCTCAAGGCTCAACCGGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCACAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGGCAACTAAGGCATCCACATCTCGTGAAGCTGATAGGATACTGCTGTGAAGAAGAACACAGGGTTTTAGTATATGAATATTTACCAAGAGGAAGCTTGGAGAATCAATTATTTAGAAGATTCTCGGCATCACTTTCATGGTCAACGAGAATGAAAATTGCTGTTGGAGCTGCGAAGGGTTTAGCATTTCTTCATGAAGCTGAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCTAACATCTTGTTAGGCTCTGATTACAATGCAAAGCTATCTGATTTTGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACTCACGTTTCAACCCGAGTTATGGGTACACACGGCTACGCAGCTCCAGAATATATCATGACAGGTCACTTGACAGCAATGAGTGACGTGTATAGTTTTGGAGTAGTGCTGTTGGAGCTGCTAACAGGGAGAAGGTCAGTGGACAAAAATCGCCCTCCAAGGGAGCAAAACCTAGTGGAGTGGGCAAGGCCAATGCTAAATGACTCTAGGAAACTCAGCAGAATAATGGATCCTAGACTTGAAGGCCAATATTCTGAAATGGGGACAAAAAAAGCAGCAGCATTGGCTTTCCAATGCCTCAGCCACAGACCAAGGAGCAGACCCTCAATGAGCACAGTGGTCAAGACCCTTGAGCCACTCCAAGATTTTGATGACATTCCAATTGGAACATTTGTTTACACAGCTCCACCGGATAATAATGAAATGCATAGTGCAAAGGATCAATGTGAGACACCTAAGAGGAGGGAAAATAATAATAACAATGGTCACCTTCATAGGAATGGCCACAGGCATCATCCACTTAAATCCCCCAAGACCCCTAGGCCACAATCACAATCACAATCACGTTCAAATGATCACAAACACCGAAATGGAAGAGGAAGTGGATCAAATTCTCCTCCATCACATGGGAAAATTAGGCAAGGAGTTCTTGCCTATTAG 1377 0.4452 MTLMKTLWKSIFPGCYKGEYPSPKPKKVVATKPNSSHRISVTDLSYPSTTLSEDLSISLAGTNLHVFSLAELKIITQQFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRVLVYEYLPRGSLENQLFRRFSASLSWSTRMKIAVGAAKGLAFLHEAEKPVIYRDFKASNILLGSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDSRKLSRIMDPRLEGQYSEMGTKKAAALAFQCLSHRPRSRPSMSTVVKTLEPLQDFDDIPIGTFVYTAPPDNNEMHSAKDQCETPKRRENNNNNGHLHRNGHRHHPLKSPKTPRPQSQSQSRSNDHKHRNGRGSGSNSPPSHGKIRQGVLAY* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1472 458 Gene3D Phosphorylase Kinase; domain 1 39 161 - -
Gso15g1472 458 MobiDBLite consensus disorder prediction 370 458 - -
Gso15g1472 458 SUPERFAMILY Protein kinase-like (PK-like) 55 357 IPR011009 -
Gso15g1472 458 ProSiteProfiles Protein kinase domain profile. 79 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1472 458 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 23 414 - -
Gso15g1472 458 Gene3D Transferase(Phosphotransferase) domain 1 162 366 - -
Gso15g1472 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso15g1472 458 PANTHER OS01G0588500 PROTEIN-RELATED 23 414 - -
Gso15g1472 458 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672|GO:0006468
Gso15g1472 458 MobiDBLite consensus disorder prediction 382 402 - -
Gso15g1472 458 CDD STKc_IRAK 85 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1472 Gso-Chr15 16983954 16987850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1472 65 393 Glycoside Hydrolase AT3G07070 50.000 4.60e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso15g1472 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1472 - - gmx:100783759 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1472 15 16983954 16987850 Gso9g0588 9 7003812 7007518 GST
Gso13g0806 13 22369947 22372448 Gso15g1472 15 16983954 16987850 PCT
Gso17g0404 17 3716408 3718971 Gso15g1472 15 16983954 16987850 PCT
Gso15g1472 15 16983954 16987850 Gso13g0806 13 22369947 22372448 PCT
Gso15g1472 15 16983954 16987850 Gso17g0404 17 3716408 3718971 PCT