Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1461 ATGATGAATGGAAGGAACAGGTTCCCCTTTACCCCATCACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAGTACATGGCTTCAGGCATTTCCATTCCACCTGATCTTCTCTTCACCATAAAAAGGAGCTATTTTGATTCCCCTCTGTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTTCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAGAATCGTTCAAGAAAGCCTGTGGAAGTTTTAAAATCAACAACAACACCATCATCATCAACAACAAACTCAAATGCTTCTTCTACACAACAAGCAATCTCATCAATCACCAAAATTAATAGCACTCTCTCACCTCTTGCATCATCTGAGACTCACCAACACCACCACTATCCTCAACACTATGGCTCCTTTCTCTATCATCATCACCCTCCTTCAAGGTCCTCTGGCATTGGCTTGTCTTTTGAAGACAACAGTGCTCCCTTGTTTCTTGACACTGGCTCATGCTCTCAGTCCAACACAGACTGCAGGTATGTTTATGGAGAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAACCTTGTGGTGTTATGAAAAGCTTCTCTGCTTCCTCTATGGATGACTCATGGCAACTCACACCATTGACTATGAGCTCCTCATCTTCATCTTCCAAGCAGAGGAGTTCCTTTGGCTTGTCCAGTGATTACTCTTGCTTGCAACTTCAGAGCCACTCAAAGCAGCAGCAGCAAGAGCATCATCAAGATCAGGGTTGCTACATGTTTGGTGCTGGTCAAGTTGTGAAAGAAGAACCTCAGAAAACGGTTCATCGCTTCTTTGATGAATGGCCACACAAAGGAAGAGAAGGCTCTTGGCTTGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATCCCCACATCTTCTCATGATTTTTCAACTTTCAGTTCCAGAACCCACCATGATGGTTGA 1092 0.446 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKSTTTPSSSTTNSNASSTQQAISSITKINSTLSPLASSETHQHHHYPQHYGSFLYHHHPPSRSSGIGLSFEDNSAPLFLDTGSCSQSNTDCRYVYGEKEEVDEHAFFTEPCGVMKSFSASSMDDSWQLTPLTMSSSSSSSKQRSSFGLSSDYSCLQLQSHSKQQQQEHHQDQGCYMFGAGQVVKEEPQKTVHRFFDEWPHKGREGSWLDLDDKSSTTQLSISIPTSSHDFSTFSSRTHHDG* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1461 363 PANTHER GROWTH-REGULATING FACTOR 5 4 339 - -
Gso15g1461 363 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso15g1461 363 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Gso15g1461 363 MobiDBLite consensus disorder prediction 105 143 - -
Gso15g1461 363 Pfam WRC 78 120 IPR014977 -
Gso15g1461 363 PANTHER - 4 339 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso15g1461 363 MobiDBLite consensus disorder prediction 120 143 - -
Gso15g1461 363 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso15g1461 363 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1461 Gso-Chr15 16789373 16791828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1461 7 120 GRF Transcription Factor Family AT3G13960 71.053 8.98e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso15g1461 WRC 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1461 - - gmx:100781613 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1461 15 16789373 16791828 Gso9g0579 9 6839345 6841746 GST
Gso13g0794 13 22266329 22269003 Gso15g1461 15 16789373 16791828 PCT
Gso17g0418 17 3815837 3818482 Gso15g1461 15 16789373 16791828 PCT
Gso15g1461 15 16789373 16791828 Gso13g0794 13 22266329 22269003 PCT
Gso15g1461 15 16789373 16791828 Gso17g0418 17 3815837 3818482 PCT