Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso15g1441 | ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTGGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGCACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCATGGTGATGGGTTTTCCACAGTAACGAAACTTCATGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGGCCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGTTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCTCTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCACACAATTAAAGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTAATATATACACACACCGAAGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCTTCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTATGGAAATGGTTGGAGGTACCTAAGGTGGCATCCTCTTGA | 1266 | 0.4408 | MDTKFARRTERIGRTTCSYWRAGKCNRNPCRFVHIETPSPPAACGYGNTAYSYGKKPHSSSENTPKYGSKKALLGDNGDRGDATRVAKAFKKSSPRICKYWINNNCAHGEQCLYLHSWFHGDGFSTVTKLHEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQAMSEFTLDGPKGRVRAMTVGNNTLFAVAEDGVIFAWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDAVTSLICWDQYLLSSSSDHTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVPKVASS* | 422 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso15g1441 | 421 | SUPERFAMILY | CCCH zinc finger | 95 | 117 | IPR036855 | GO:0046872 | |
Gso15g1441 | 421 | SMART | WD40_4 | 330 | 371 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | SMART | WD40_4 | 287 | 324 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | SMART | WD40_4 | 202 | 239 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | SMART | WD40_4 | 123 | 162 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | SMART | WD40_4 | 374 | 411 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | SMART | WD40_4 | 247 | 284 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | PRINTS | G protein beta WD-40 repeat signature | 149 | 163 | IPR020472 | - | |
Gso15g1441 | 421 | PRINTS | G protein beta WD-40 repeat signature | 271 | 285 | IPR020472 | - | |
Gso15g1441 | 421 | PRINTS | G protein beta WD-40 repeat signature | 311 | 325 | IPR020472 | - | |
Gso15g1441 | 421 | PANTHER | - | 4 | 420 | IPR044715 | - | |
Gso15g1441 | 421 | ProSiteProfiles | Zinc finger C3H1-type profile. | 11 | 37 | IPR000571 | GO:0046872 | |
Gso15g1441 | 421 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
Gso15g1441 | 421 | Gene3D | - | 9 | 119 | - | - | |
Gso15g1441 | 421 | SUPERFAMILY | WD40 repeat-like | 126 | 413 | IPR036322 | GO:0005515 | |
Gso15g1441 | 421 | SMART | c3hfinal6 | 11 | 36 | IPR000571 | GO:0046872 | |
Gso15g1441 | 421 | SMART | c3hfinal6 | 92 | 118 | IPR000571 | GO:0046872 | |
Gso15g1441 | 421 | Pfam | WD domain, G-beta repeat | 249 | 284 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | Pfam | WD domain, G-beta repeat | 289 | 323 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | Pfam | WD domain, G-beta repeat | 127 | 162 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 294 | 323 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 | 4 | 420 | - | - | |
Gso15g1441 | 421 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 271 | 285 | IPR019775 | - | |
Gso15g1441 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 130 | 162 | - | - | |
Gso15g1441 | 421 | Gene3D | - | 194 | 419 | IPR015943 | GO:0005515 | |
Gso15g1441 | 421 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 119 | IPR000571 | GO:0046872 | |
Gso15g1441 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 254 | 287 | - | - | |
Gso15g1441 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 130 | 171 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 254 | 293 | IPR001680 | GO:0005515 | |
Gso15g1441 | 421 | Gene3D | - | 120 | 183 | IPR015943 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso15g1441 | Gso-Chr15 | 16302545 | 16305603 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso15g1441 | 129 | 371 | Acyl Lipid Metabolism Gene Families | AT3G18860 | 27.138 | 7.82e-10 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Gso15g1441 | WD40 | 8.6e-05 | CL0186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso15g1441 | - | - | gmx:100795033 | 879.396 |