Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1441 ATGGATACAAAGTTTGCACGAAGGACTGAGCGCATTGGTAGAACAACATGCTCTTATTGGAGAGCTGGAAAATGTAACAGAAATCCATGCAGATTTGTGCACATAGAGACACCATCTCCACCTGCTGCTTGTGGTTATGGCAATACTGCATATAGCTACGGAAAAAAGCCCCATTCCTCCTCTGAGAATACCCCGAAATATGGTTCAAAGAAAGCATTGCTTGGAGATAATGGAGATAGAGGAGATGCAACAAGGGTTGCTAAGGCTTTCAAGAAATCATCACCAAGGATATGTAAATACTGGATCAACAACAATTGTGCACATGGTGAACAATGCCTGTATCTGCATTCATGGTTTCATGGTGATGGGTTTTCCACAGTAACGAAACTTCATGAACATAAGAAGGTTATCACTGGCATCGCACTTCCTGTTGGATCCGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTAGGATATGGGACTGCCATACTGGTCAATGTGCTAAAGTCATCAATCTTGGTGCTGAGGTTACCTCTTTGATCAGTGAGGGGTCATGGATTTTTGTTGGTCTGCAAAATGCTGTCAAGGCTTGGAATATCCAGGCCATGTCAGAGTTTACTCTTGATGGACCCAAAGGCCGAGTCCGTGCCATGACTGTTGGCAACAATACACTCTTTGCTGTTGCAGAGGATGGTGTCATTTTTGCTTGGAGAGGAAGCTCTAAAGCCGATTCTCCTTTTGAACTGGTTGCGTCTCTCACTGGCCACACTAAAGCAGTGGTTTGTCTGGCGGTTGGATGCAAGATGCTGTACTCCGGGTCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAGTGTACAATGACACTAAATGATCATACTGATGCAGTCACATCCCTTATCTGTTGGGATCAATATCTGTTGTCAAGTTCATCTGACCACACAATTAAAGTCTGGGCTTGCATTGAAGCAGGATCTTTGGAAGTAATATATACACACACCGAAGAAAATGGTGTTGTTTCACTCTTTGGGATGCCTGATGCAGAGGGAAAGCCAATATTATTTTCCTCGTGCAGAGACAATTCAGTTCACATGTATGAATTGCCTTCATTTTCAGAGAGGGGACGTTTATTTGCCAAGAAAGATGTGGCATTGATTGAGTTAGGTCCTGGTGGCCTCTTCTTCACTGGAGATGAGAGTGGTTTGCTGATGGTATGGAAATGGTTGGAGGTACCTAAGGTGGCATCCTCTTGA 1266 0.4408 MDTKFARRTERIGRTTCSYWRAGKCNRNPCRFVHIETPSPPAACGYGNTAYSYGKKPHSSSENTPKYGSKKALLGDNGDRGDATRVAKAFKKSSPRICKYWINNNCAHGEQCLYLHSWFHGDGFSTVTKLHEHKKVITGIALPVGSDKLYSGSTDGTVRIWDCHTGQCAKVINLGAEVTSLISEGSWIFVGLQNAVKAWNIQAMSEFTLDGPKGRVRAMTVGNNTLFAVAEDGVIFAWRGSSKADSPFELVASLTGHTKAVVCLAVGCKMLYSGSMDQSIKVWDMDTLQCTMTLNDHTDAVTSLICWDQYLLSSSSDHTIKVWACIEAGSLEVIYTHTEENGVVSLFGMPDAEGKPILFSSCRDNSVHMYELPSFSERGRLFAKKDVALIELGPGGLFFTGDESGLLMVWKWLEVPKVASS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1441 421 SUPERFAMILY CCCH zinc finger 95 117 IPR036855 GO:0046872
Gso15g1441 421 SMART WD40_4 330 371 IPR001680 GO:0005515
Gso15g1441 421 SMART WD40_4 287 324 IPR001680 GO:0005515
Gso15g1441 421 SMART WD40_4 202 239 IPR001680 GO:0005515
Gso15g1441 421 SMART WD40_4 123 162 IPR001680 GO:0005515
Gso15g1441 421 SMART WD40_4 374 411 IPR001680 GO:0005515
Gso15g1441 421 SMART WD40_4 247 284 IPR001680 GO:0005515
Gso15g1441 421 PRINTS G protein beta WD-40 repeat signature 149 163 IPR020472 -
Gso15g1441 421 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Gso15g1441 421 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Gso15g1441 421 PANTHER - 4 420 IPR044715 -
Gso15g1441 421 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Gso15g1441 421 MobiDBLite consensus disorder prediction 55 76 - -
Gso15g1441 421 Gene3D - 9 119 - -
Gso15g1441 421 SUPERFAMILY WD40 repeat-like 126 413 IPR036322 GO:0005515
Gso15g1441 421 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Gso15g1441 421 SMART c3hfinal6 92 118 IPR000571 GO:0046872
Gso15g1441 421 Pfam WD domain, G-beta repeat 249 284 IPR001680 GO:0005515
Gso15g1441 421 Pfam WD domain, G-beta repeat 289 323 IPR001680 GO:0005515
Gso15g1441 421 Pfam WD domain, G-beta repeat 127 162 IPR001680 GO:0005515
Gso15g1441 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 323 IPR001680 GO:0005515
Gso15g1441 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 4 420 - -
Gso15g1441 421 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Gso15g1441 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Gso15g1441 421 Gene3D - 194 419 IPR015943 GO:0005515
Gso15g1441 421 ProSiteProfiles Zinc finger C3H1-type profile. 92 119 IPR000571 GO:0046872
Gso15g1441 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 287 - -
Gso15g1441 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Gso15g1441 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 293 IPR001680 GO:0005515
Gso15g1441 421 Gene3D - 120 183 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1441 Gso-Chr15 16302545 16305603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1441 129 371 Acyl Lipid Metabolism Gene Families AT3G18860 27.138 7.82e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso15g1441 WD40 8.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1441 - - gmx:100795033 879.396