Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1436 ATGTCGCTGAATCTCACGGCAAACGCGATCCCGGCGATAATCGGTGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGCTAGTCTCCAATAGCAACAACTCGCAGCAGCAGCAGCAGAGGTACCGTCTTCTGCTATCCGACGCCGTTTTCTCTCACCACGCGATGCTCGCAACTCAGCTCAACGACCGAGTCCGAACCGGTCGAGTTCAGAAGGGTTCGGTTGTTCAGCTTCTCGATTATATATGCACTCCTCTCAAGAACCGCAAGATTATTGTGATTCTAAACATGGAAACTATAATGGATGAGTTTGAGATCATTGGGAATCCAAAGCCATATATGGATTCTGATATACCAACAGTGAGAGCTTCAGATTCAGCTTCAGCTGATAGCACTGTTGAGAATTTGCCCAGGAGTTATAATAGTAATAATAGTTCTGCTGGTCAAAATGCAAGTCACAATAACACGCAGAATTTCAGGCCAACTATTCAACCTCCATACCAACCACCTCCACTTTACAAAGGCCGTGGGCCAGTTGTGAAAAATGAGGCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCGTATCAGGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCTAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGACCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTGTTGGAATCATCTTCAATGGTTGAGCTCTGCCCAGACGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATTAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTGAAGGACAGTTCTGGCAGTAGTGTTGAACTTACACTGTGGGGCGAATTCTGCAACAGGGAAGGACAACAGCTTCAAGACATGGTGGATGCTGGATTTTTCCCAATTTTAGCAGTCAAAACTGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGTTCTATTTCTACCACGCAGCTTTTCATAAATCCTGATTTTCCTGAGGCTCATAGCTTAAGAGAATGGTTTGAACTGGTAGGAAAAGATTCTGCCTCCTTATCGATTTCTAAGGACATTATTCCCGGAGCATTGAAGAATGAGGTCCGCAAAACTGTGTCTCAAATCAAGGATGAAGGTCTAGGGCGGTCAGACAAGCCAGACTGGATAACAGTAAGGGCTGCTATATTATTCATCAAGACAGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGCTAGGAAACACCAGGTGGCAATGTGATAGATGCAACCAAGAATTTGAGGAGTGTGATTACCGATACCTTCTCCAAGTTCAAATTCTTGATGGCACAGGATTAGCTTGGGTAACTGCTTTCCAAGAAGCAGGGGAAGAGATTATGGATTACTCAGCAAAGGATCTGTACTTTTTGAAACATGAAGAGCAGGATGATGAGAAGTTTGGAGAAATAATCAAGAGCCGACTCTTCAACCAGTTCATGTTTAGGCTGAAAATCAAAGAGGAATTATACGGCGATGAACAGAAGGTGAAGATTACTGTGGTCAAGGCTGATAAGGTGAACTACTCTTCAGAGAGTAGATACATGCTTGATACGATTTCCAAGTTTTGTAGGCAGTAA 1914 0.4368 MSLNLTANAIPAIIGGDVNAKPLVQVLDVALVSNSNNSQQQQQRYRLLLSDAVFSHHAMLATQLNDRVRTGRVQKGSVVQLLDYICTPLKNRKIIVILNMETIMDEFEIIGNPKPYMDSDIPTVRASDSASADSTVENLPRSYNSNNSSAGQNASHNNTQNFRPTIQPPYQPPPLYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGSSVELTLWGEFCNREGQQLQDMVDAGFFPILAVKTGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFELVGKDSASLSISKDIIPGALKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVTRLGNTRWQCDRCNQEFEECDYRYLLQVQILDGTGLAWVTAFQEAGEEIMDYSAKDLYFLKHEEQDDEKFGEIIKSRLFNQFMFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDTISKFCRQ* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1436 637 Pfam Replication protein A OB domain 314 418 IPR031657 -
Gso15g1436 637 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso15g1436 637 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 3 631 - -
Gso15g1436 637 Gene3D - 190 300 IPR012340 -
Gso15g1436 637 MobiDBLite consensus disorder prediction 124 165 - -
Gso15g1436 637 SUPERFAMILY Nucleic acid-binding proteins 308 435 IPR012340 -
Gso15g1436 637 CDD RPA1_DBD_C 460 633 IPR013955 -
Gso15g1436 637 CDD RPA1_DBD_A 193 296 - -
Gso15g1436 637 Gene3D - 449 635 IPR012340 -
Gso15g1436 637 MobiDBLite consensus disorder prediction 121 173 - -
Gso15g1436 637 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Gso15g1436 637 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 633 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gso15g1436 637 Pfam OB-fold nucleic acid binding domain 205 286 IPR004365 GO:0003676
Gso15g1436 637 SUPERFAMILY Nucleic acid-binding proteins 190 303 IPR012340 -
Gso15g1436 637 Gene3D - 303 440 IPR012340 -
Gso15g1436 637 SUPERFAMILY Nucleic acid-binding proteins 457 634 IPR012340 -
Gso15g1436 637 CDD RPA1N 9 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gso15g1436 637 Pfam Replication factor-A C terminal domain 476 626 IPR013955 -
Gso15g1436 637 CDD RPA1_DBD_B 325 432 - -
Gso15g1436 637 Gene3D - 4 117 IPR012340 -
Gso15g1436 637 PANTHER REPLICATION FACTOR A 1, RFA1 3 631 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1436 Gso-Chr15 16171261 16173953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1436 26 633 Core DNA Replication Machinery Family AT2G06510 68.720 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1436 K07466 - gmx:100792409 1231.08