Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1431 ATGGGTGATGTTCTAAGCCCCTTCACCATCTCATCCCCTCCTCCACCCTCCTCTCCATCAACCAAGAGCAACAGCATGCCCATGTTGTACTACGGTCTCGTGGTGGTCGGAACCGCCGCCATAGTACTAGCCATATACAACCTCGTCCTCCTAAGACGGAGCCACACGCGCCATGCGCTGCCGTCGCAAAGTACTGGGCAAAATAGAGATATTGTACGAGTGCCCGAGATGAGAACGAGGAGCTTCGAGGACAGCCAACAAAGGAACTTGTTGTCGAGCTTCAAGTACAAGAAAGAAGTTGTGGCCAAAGAAGAAGAACAAGAAGAAGAAGAGCAAGATGATGATGAATTTGAGTGCTCCGTTTGCTTATCGGTTTATGAAGAAGGTGAAGAGGTGAGGAAGCTTCCACAGTGCAAGCACTATTTCCACGTTCTTTGCATAGACATGTGGCTTTACTCCCACTTGGATTGCCCGATTTGTAGAACGCCCGTTGATGTTGTTGGCCCTTTGTGTCCGCTGGAGAATTCACCTGATGGGATGATGGAATCCGGTGGTGGCATACCATCATCTCTCTAG 576 0.4983 MGDVLSPFTISSPPPPSSPSTKSNSMPMLYYGLVVVGTAAIVLAIYNLVLLRRSHTRHALPSQSTGQNRDIVRVPEMRTRSFEDSQQRNLLSSFKYKKEVVAKEEEQEEEEQDDDEFECSVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVDVVGPLCPLENSPDGMMESGGGIPSSL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1431 191 SUPERFAMILY RING/U-box 109 168 - -
Gso15g1431 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 171 IPR044675 -
Gso15g1431 191 SMART ring_2 119 160 IPR001841 -
Gso15g1431 191 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gso15g1431 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 166 IPR013083 -
Gso15g1431 191 Pfam Ring finger domain 118 161 IPR001841 -
Gso15g1431 191 MobiDBLite consensus disorder prediction 1 23 - -
Gso15g1431 191 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1431 Gso-Chr15 16057419 16058195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1431 16 177 C3H Transcription Factor Family AT1G04360 32.768 2.17e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1431 - - gmx:102668279 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0787 13 22212190 22212732 Gso15g1431 15 16057419 16058195 PCT
Gso17g0424 17 3868067 3868618 Gso15g1431 15 16057419 16058195 PCT
Gso15g1431 15 16057419 16058195 Gso13g0787 13 22212190 22212732 PCT
Gso15g1431 15 16057419 16058195 Gso17g0424 17 3868067 3868618 PCT