Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1423 ATGAAGAAAGCAGGGAGCATAAGCTCTGGTCTCAAACTCACAGTTCCTGCTGCATCTGATCGTGATTCATTTACAAAGTTCCGGTCTGAGCCTGAAAGTGGAACGTTTAAGGCTGGTGACTTGCTTGTCAATAATGAAGGAGTTCGAATTGTCTCTGAGAATGAAGTGGAAGCTCCACCCCCGATCAGGCCACAAGATAACCAGTTAAGTTTGGCAGACATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGGTAGTGCAATTGGTGCAACACAAATGGACTAATCAGTTTTTTGCATTGAAGGAAATCCAAATGCCTATTGAGGAGCCTATCCGCAGGCAGATAGCACAAGAGCTAAAAATCAATCAATCAGCACAATGTCCCTATGTTGTTGTTTGCTACAATTCATTCTATCATAACGGTGTCATATCAATCATTTTAGAGTACATGGACGGAGGGTCCTTGGAAGATCTTCTGAGCAAAGTTAAAACAATTCCAGAGTCATATCTTTCTGCCATCTGCAAGCAGGTGCTCAAGGGTTTAATGTATCTTCACTATGCAAAACATATTATCCATAGGGACTTAAAACCTTCTAATCTGCTGATAAATCATAGAGGGGAGGTAAAGATTACTGACTTTGGTGTAAGTGTAATCATGGAAAATACATCTGGTCAAGCAAATACATTCATTGGCACATACAGCTATATGTCGCCAGAAAGAATCATTGGTAACCAGCATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGACTGATTTTGCTCAAGTGTGCTACGGGGCAGTTTCCATATACACCACCGGATCGTGAAGGGTGGGAAAATATTTTCCAGCTTATTGAAGTCATTGTGGAAAAACCTTCTCCCAGTGCTCCATCAGATGATTTTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCAGGGGATAGACCGTCAGCTCGGGACCTTATAAATCATCCTTTTATCAACATGCATGAGGACTTGAACGTGGATCTTTCAGCTTATTTCTTCAACTCAGGATGTACACTTGCAACCATATAG 1080 0.4093 MKKAGSISSGLKLTVPAASDRDSFTKFRSEPESGTFKAGDLLVNNEGVRIVSENEVEAPPPIRPQDNQLSLADIDTIKVIGKGNGGVVQLVQHKWTNQFFALKEIQMPIEEPIRRQIAQELKINQSAQCPYVVVCYNSFYHNGVISIILEYMDGGSLEDLLSKVKTIPESYLSAICKQVLKGLMYLHYAKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMENTSGQANTFIGTYSYMSPERIIGNQHGYNYKSDIWSLGLILLKCATGQFPYTPPDREGWENIFQLIEVIVEKPSPSAPSDDFSPEFCSFISACLQKNPGDRPSARDLINHPFINMHEDLNVDLSAYFFNSGCTLATI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1423 359 SMART serkin_6 74 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1423 359 Gene3D Transferase(Phosphotransferase) domain 1 154 353 - -
Gso15g1423 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gso15g1423 359 PANTHER MAP KINASE KINASE 4 359 - -
Gso15g1423 359 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Gso15g1423 359 Gene3D Phosphorylase Kinase; domain 1 49 153 - -
Gso15g1423 359 CDD PKc_MAPKK_plant_like 72 339 - -
Gso15g1423 359 Pfam Protein kinase domain 76 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1423 359 ProSiteProfiles Protein kinase domain profile. 74 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1423 359 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 4 359 - -
Gso15g1423 359 SUPERFAMILY Protein kinase-like (PK-like) 68 341 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1423 Gso-Chr15 15838870 15844553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1423 1 330 MAP Kinase Kinase Gene Family AT4G29810 64.497 1.33e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gso15g1423 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1423 K20603 - gmx:100789241 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0773 13 22063631 22068620 Gso15g1423 15 15838870 15844553 PCT
Gso17g0438 17 3972443 3977535 Gso15g1423 15 15838870 15844553 PCT
Gso15g1423 15 15838870 15844553 Gso13g0773 13 22063631 22068620 PCT
Gso15g1423 15 15838870 15844553 Gso17g0438 17 3972443 3977535 PCT