Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1413 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTTGGCCGTAAGATTGGTAGCGGATCGTTTGGAGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTATATGAGTCCAAGTTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAGATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCAGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCACATGATCAACCGTGTTGAGTTTGTTCATTCTAAATCATTTCTTCATCGGGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTTGGTTTGGCCAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAACAAGAATTTAACTGGGACTGCTAGATACGCGAGTATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTGGAGTCTGTTGGTTTTGTCTTGATGTATTTCTTGAGAGGAAGTCTCCCTTGGCAAGGACTTAAAGCAGGAACAAAGAAACACAAGTACGAGAGAATCAGTGAAAAAAAGGTTTCTACCTCAATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTTGCGACTTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACAATCTTGAAGTATCAGCAATCACAGCTAGCTGCTCCTCCAGCACGTGCCATTGGTCCTAATGTTGGAACTAGTTCTGCAATGCCACCGGCTGTGACTAATGCTGATAGACAGACAGGAGAGGAAGAAGGGCGACCTCCTGGTCTGGTTTCAGGGGATTCCACAAGGCGAAGAATGTCAGGGCCCATCACAAACTCTGTAAATATTTCAAAGCAGAAAAATCCAGTCACTACGGATGCTGCCCTTAATAAGGAAGCCATGTTATCAAGGCCCAATGTCTTGGGGCAGTCAAGTGGATCAAGGCGAGCTGCGGTTTCTAGTAGGCGTGATGCATTTGTTGGTTCGGATTTGGATCTTCGTACTCGTTCTACTGAGGCTAACCCTGGAACAGCAATTAAAACATCATCTGCGAGAAATGCTTCTCATGTCAAGAACTATGAAACTGCAATCAAGGGCATTGAGGGTTTGCAATTAGAAAATGATGAGAAGGCACATTATTGA 1371 0.4252 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPDVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADHMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESVGFVLMYFLRGSLPWQGLKAGTKKHKYERISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFCDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAIGPNVGTSSAMPPAVTNADRQTGEEEGRPPGLVSGDSTRRRMSGPITNSVNISKQKNPVTTDAALNKEAMLSRPNVLGQSSGSRRAAVSSRRDAFVGSDLDLRTRSTEANPGTAIKTSSARNASHVKNYETAIKGIEGLQLENDEKAHY* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1413 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso15g1413 456 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 438 IPR030509 GO:0004672|GO:0005524
Gso15g1413 456 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso15g1413 456 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Gso15g1413 456 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1413 456 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1413 456 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1413 456 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso15g1413 456 MobiDBLite consensus disorder prediction 311 359 - -
Gso15g1413 456 CDD STKc_CK1_delta_epsilon 8 282 - -
Gso15g1413 456 PANTHER CASEIN KINASE-RELATED 1 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1413 Gso-Chr15 15663969 15676150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1413 7 222 EF-hand Containing Proteins AT2G17890 25.000 1.30e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso15g1413 Pkinase 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1413 K02218 - gmx:100784627 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1413 15 15663969 15676150 Gso9g0551 9 6250244 6256556 GST
Gso13g0764 13 21973179 21979339 Gso15g1413 15 15663969 15676150 PCT
Gso17g0449 17 4066613 4072908 Gso15g1413 15 15663969 15676150 PCT
Gso15g1413 15 15663969 15676150 Gso13g0764 13 21973179 21979339 PCT
Gso15g1413 15 15663969 15676150 Gso17g0449 17 4066613 4072908 PCT