Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1406 ATGTTAAGTAGTAAGTGCTTCTTTCCCACTAGGTACTTTTCAAACTCCCTGGAAGACCAACACAATTATATTTTTGCAACACCCACATGCAGTCGTTTGAGCTTCTTGGATGGTATCTACAATGTAAGGAACAACCAAGCAAGCTCTAGTTTGGGGAGTGTGCAGGCACAACAGCTTTTCAGTCAGTTCCGGACTTTGACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAATCAACGACCCTACCTAGAGCTCCAACAATTGGAACTTCTCAGATTAGCATCCACAGAAATACAAATACAATTCTTTCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAGGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAAGATTTTTCCACTAGAGTACAGTCCCAGCAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTCTGAGATCAATATCCACAGGTAGCCCTGAATACTCATCACTTATATTCAGTATTCCAGGCACATCTCAACCCCACTTTCCACCTGAGACTCTTGGAGCATCATCATCAAGAGTAGTGCCAACAATGCAGCCAGTGCCAAATAGTCCTCACCAACGAGCCATTGATATTCAAGCATTGACAGAAGTCCCTTCTCTAACCCAATTCCCCACACCAGAAACTGAACATGATGCAATCATGAGAGCAATCCTCCATGTTATATCTCCAACAACTTCTCATCATCATGAGCAGCAGCACCACCAAAACTTACCTTATAGTAATAATTCTCTTCCTGTGGTGCGTCCTGATGCTAGTGCTTTCCAGAGGTATAGACAAGACTTAGGCTCCAACATGGCCTCAAATTTCAGAAGGCAAAGCCTCATGAAGAGGTCTCTTGTGTTCTTTAGAAACATGAACTTTATGAGAATGAGAGAACGCGTTCAAGCAACGTCTCGTCCCACCAATACTCAGCTTCATCATATGATATCAGAGAGGAGAAGGCGTGAGAAGCTAAACGAGAATTTTCAAGCACTTAGAGCACTTCTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCAGCAAAGGAGACATTGAGGTCTTTGATGACTGAAGTTGATAAACTAAGCAACAGAAATCAGGGATTGACGTCACTTTTGCCAGCCAAAGAATCTACAGCTGAAGAAACCAAGGTAGCTAGTTTATCACCAAATGAAAGATTAAGTGTCAGAATTTCACATGTACCCGAATCAAGCACATCAGAAGAGAGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAACTGATTTATTAATCCGGTTATTGAAATTCTTAAAACTGGCTCACCACGTGAGTTTGGTTTCCATGGACGCAAACACTCACATTGCAGAAGGGAACAATGCACTTCATCAACTAACCTTCAGATTGAGGATTATTCAGGGAAGTGAATGGGACGAGTCTGCCTTCGAGGAAGCAGTAAGAAGAGTAGTTGCTGACTTGGCACAGTACCAAATGGACCAATAA 1584 0.4211 MLSSKCFFPTRYFSNSLEDQHNYIFATPTCSRLSFLDGIYNVRNNQASSSLGSVQAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTEIQIQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSTRVQSQQIDQNPPTSSSSSLRSISTGSPEYSSLIFSIPGTSQPHFPPETLGASSSRVVPTMQPVPNSPHQRAIDIQALTEVPSLTQFPTPETEHDAIMRAILHVISPTTSHHHEQQHHQNLPYSNNSLPVVRPDASAFQRYRQDLGSNMASNFRRQSLMKRSLVFFRNMNFMRMRERVQATSRPTNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKETLRSLMTEVDKLSNRNQGLTSLLPAKESTAEETKVASLSPNERLSVRISHVPESSTSEERMVELQVNVRGQVSQTDLLIRLLKFLKLAHHVSLVSMDANTHIAEGNNALHQLTFRLRIIQGSEWDESAFEEAVRRVVADLAQYQMDQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1406 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Gso15g1406 527 MobiDBLite consensus disorder prediction 258 278 - -
Gso15g1406 527 Gene3D - 335 410 IPR036638 GO:0046983
Gso15g1406 527 CDD bHLH_AtbHLH_like 341 393 IPR045239 -
Gso15g1406 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 29 520 - -
Gso15g1406 527 Coils Coil 342 362 - -
Gso15g1406 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 400 IPR036638 GO:0046983
Gso15g1406 527 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
Gso15g1406 527 MobiDBLite consensus disorder prediction 152 175 - -
Gso15g1406 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 29 520 IPR044658 -
Gso15g1406 527 SMART finulus 342 391 IPR011598 GO:0046983
Gso15g1406 527 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1406 Gso-Chr15 15511136 15516599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1406 22 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.360 1.31e-87 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g1406 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1406 - - gmx:100807098 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1406 15 15511136 15516599 Gso9g0541 9 6118974 6124382 GST
Gso13g0761 13 21929103 21933004 Gso15g1406 15 15511136 15516599 PCT
Gso17g0454 17 4109508 4113085 Gso15g1406 15 15511136 15516599 PCT
Gso15g1406 15 15511136 15516599 Gso13g0761 13 21929103 21933004 PCT
Gso15g1406 15 15511136 15516599 Gso17g0454 17 4109508 4113085 PCT