Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1391 ATGATACCAACTTATCGTTACTCAGTGTCTTCACCTATGCCTATAGATCTTAATGAAGATCACACCCACCACCTCTTCAGTACAAATCATCAAGCCTCTTGTTCATCTTCTTCGCTATCTTATTCTATTCTCTTCAACCCGGATCAAGATCAGGGAGGATCTTGTAGCGACTGGAAATCCAAGCATTTGCAAAGTGATGAAGAGGCCCAGAAGATTGTTCCTTCTAGTGGATTATCCGAAAAGGATGAAAACAAAAGTGATCTCAAGCTGAGGGTTTGGAAGAAAGAAGATAAGTGTGAAAATTTTCAAGGTGAAGATAATTCAACCAAGTGGATGCCTTTAAAGATGAGAATGATGCGGAGGCTGATGGTGTCAGATCAAACGGGTTCTGATGATACAGAAGGCATGATCTCTAACTCTCAGAAGATCAAGTATGAAGAGAAAAACTCACCACTGTCCCCTCTAGGAACTGATGATAGTAACTACAATTCTTCTTCAAACCACAGCAATATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGTACGACGTGCCATTGCCGCCGCTGCAACGGCAAGCGGAACAAATCCGGTGGAGGCTGAGAAATCTCAAGTGAAGAAGGGAAACACGTTGCATAGCAAAGGGATGAAGTCCAAAACTGAGGGTGCACAACAGATGAAAAAGAATCGTAAACTCGGAGCCAGGTATAGAAAGAGGTTTGGTGCTTTTGAGGATTTGACAGTGAGATTGAGTAAGAACTTCGCTCTCCAGCAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTTCTTCATGGCTTTCCCACGGATCGTTATATCACTTAG 948 0.4346 MIPTYRYSVSSPMPIDLNEDHTHHLFSTNHQASCSSSSLSYSILFNPDQDQGGSCSDWKSKHLQSDEEAQKIVPSSGLSEKDENKSDLKLRVWKKEDKCENFQGEDNSTKWMPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSNHSNITVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKVRRAIAAAATASGTNPVEAEKSQVKKGNTLHSKGMKSKTEGAQQMKKNRKLGARYRKRFGAFEDLTVRLSKNFALQQVFPQDEKEAAILLMALSYGLLHGFPTDRYIT* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1391 315 MobiDBLite consensus disorder prediction 144 166 - -
Gso15g1391 315 Gene3D - 172 265 IPR013088 GO:0006355|GO:0008270
Gso15g1391 315 MobiDBLite consensus disorder prediction 65 85 - -
Gso15g1391 315 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Gso15g1391 315 ProSiteProfiles GATA-type zinc finger domain profile. 174 206 IPR000679 GO:0006355|GO:0043565
Gso15g1391 315 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Gso15g1391 315 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 307 - -
Gso15g1391 315 CDD ZnF_GATA 175 210 IPR000679 GO:0006355|GO:0043565
Gso15g1391 315 SMART GATA_3 170 221 IPR000679 GO:0006355|GO:0043565
Gso15g1391 315 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 307 - -
Gso15g1391 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 210 - -
Gso15g1391 315 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1391 Gso-Chr15 15157199 15159298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1391 15 307 C2C2-Gata Transcription Factor Family AT4G26150 33.241 3.93e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso15g1391 GATA 4.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1391 - - gmx:100780875 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1391 15 15157199 15159298 Gso9g0531 9 5911273 5913635 GST
Gso13g0749 13 21795058 21797172 Gso15g1391 15 15157199 15159298 PCT
Gso17g0465 17 4203904 4206080 Gso15g1391 15 15157199 15159298 PCT
Gso15g1391 15 15157199 15159298 Gso13g0749 13 21795058 21797172 PCT
Gso15g1391 15 15157199 15159298 Gso17g0465 17 4203904 4206080 PCT