Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1385 ATGGAAGATGATGAGGCATGCATCACGAGTCTGAGCCTTGGACTTGGAATAATGGGAGGGCATGCTCCAAAGAAGGAGAATAAGCAGAAAGTTCCTTGCTTGGACCTATCTTTTGAGCTTTGTCCAAAAGGGGAAGAAGAAGAAGAAGAAGCCATTGACGTGGATCAACAACAACATGGTAATAAGGCCAAAGGGTTGTTGTGTTTGAAGCACCCAAATGATGAAACAAGCCCTGATAGCAACAATAGCAATAACGGCAGCAGAAAGAAACTGAAGCTCACAAAGGAGCAATCAGCCACCCTTGAAGATATTTTCAAGCTGCATAGCTCTCTTAACCCCGCACAGAAACAGGCACTTGCTGAACAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTGACCGATGAGAATCTAAGGCTGAAGAAGGAGTTGCAAGAGCTGCGTGCACAAAAGATTGGATCAACACCACTGTACATTCAACTCTCCAAGGCCACAACCTTGACCATTTGTTCATCGTGCGAGAAACTGTTGAAGCCCAATGAAGGGAACAAAGGAGCCATTAACAAATTGCAGAACAGTATAGAGTTAGGGGGTATCTAG 681 0.4405 MEDDEACITSLSLGLGIMGGHAPKKENKQKVPCLDLSFELCPKGEEEEEEAIDVDQQQHGNKAKGLLCLKHPNDETSPDSNNSNNGSRKKLKLTKEQSATLEDIFKLHSSLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGSTPLYIQLSKATTLTICSSCEKLLKPNEGNKGAINKLQNSIELGGI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1385 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 64 214 - -
Gso15g1385 226 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Gso15g1385 226 Gene3D - 67 143 - -
Gso15g1385 226 MobiDBLite consensus disorder prediction 68 92 - -
Gso15g1385 226 SMART halz 144 187 IPR003106 GO:0006355|GO:0043565
Gso15g1385 226 SMART HOX_1 86 148 IPR001356 GO:0003677
Gso15g1385 226 CDD homeodomain 88 145 IPR001356 GO:0003677
Gso15g1385 226 Pfam Homeobox associated leucine zipper 144 177 IPR003106 GO:0006355|GO:0043565
Gso15g1385 226 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Gso15g1385 226 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Gso15g1385 226 Coils Coil 143 177 - -
Gso15g1385 226 Pfam Homeodomain 88 142 IPR001356 GO:0003677
Gso15g1385 226 PANTHER - 64 214 - -
Gso15g1385 226 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1385 Gso-Chr15 15048981 15050797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1385 87 203 Homeobox Transcription Factor Family AT4G37790 75.214 1.68e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso15g1385 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1385 K09338 - gmx:100778922 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1385 15 15048981 15050797 Gso9g0527 9 5857298 5858919 GST
Gso13g0742 13 21724270 21725911 Gso15g1385 15 15048981 15050797 PCT
Gso17g0473 17 4277393 4279068 Gso15g1385 15 15048981 15050797 PCT
Gso15g1385 15 15048981 15050797 Gso13g0742 13 21724270 21725911 PCT
Gso15g1385 15 15048981 15050797 Gso17g0473 17 4277393 4279068 PCT