Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1381 ATGATGGCATTGGATATGATAGATGTTGTTCCAAGAACGAGGATGGAGGAAGCTGCTTCCGCTGGATTAAAGAGCATGGAGCATCTCATTCGACTCCTTTCTCCAACCTCTTCTTATTCCAATTCTTCTTCTTCTCCTCTTCTCAATACCAATCCCAACAACCTCCACTGCTCCCAAATCACCGACTTCACCGTCTCCAACTTCAAACAAGTCATCAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCTCTCCACCCCAAGCCCAAGCCCAAGCCCAAGCCCAAACCCAAACAAGTCTTCAGCCTCAACCAGAAACCCAACAAGGGTTCAGTTTAGATTTCGTGAAGCCCACCATTCTAAACTCAAAACCCAGCAACAAAGACGAGACTTTGACCCTCTCCACCACCTCCTCCTCCTCCTTCACGTCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGCCCTTTCCTCCCTCCCTCCGCCGCCAAGCCACCTCTCTCCTCCGCCCACCGGAAAAAGTGCCGCGACGCTGCCGCCGCACTCTCCACCAAACCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACGAACGATTCGTGTGCCGGCGGTAAGCTCCAAGATCGCCGATATCCCATCGGACGAGTACTCGTGGAGAAAATACGGTCAAAAACCGATCAAGGGTTCACCTTACCCTCGAGGGTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCGCAAGATAACCCCAAGATGCTAATAGTGACTTACGAGGGTGAGCACCGTCACGTTCTTCCGTTAACTGCCGCTGCCGGCGTTAGTTTCGGCCATTAA 876 0.5445 MMALDMIDVVPRTRMEEAASAGLKSMEHLIRLLSPTSSYSNSSSSPLLNTNPNNLHCSQITDFTVSNFKQVINLLNRTGHARFRRSPPQAQAQAQAQTQTSLQPQPETQQGFSLDFVKPTILNSKPSNKDETLTLSTTSSSSFTSSVTNDASVSDGKIGPFLPPSAAKPPLSSAHRKKCRDAAAALSTKPSCHCSKKRKSRVKRTIRVPAVSSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDNPKMLIVTYEGEHRHVLPLTAAAGVSFGH* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1381 291 MobiDBLite consensus disorder prediction 120 179 - -
Gso15g1381 291 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1381 291 SMART WRKY_cls 219 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1381 291 MobiDBLite consensus disorder prediction 120 153 - -
Gso15g1381 291 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g1381 291 Gene3D WRKY domain 205 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g1381 291 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 9 285 IPR044810 GO:0003700
Gso15g1381 291 MobiDBLite consensus disorder prediction 84 108 - -
Gso15g1381 291 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 9 285 - -
Gso15g1381 291 Pfam Plant zinc cluster domain 176 217 IPR018872 -
Gso15g1381 291 ProSiteProfiles WRKY domain profile. 214 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1381 291 MobiDBLite consensus disorder prediction 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1381 Gso-Chr15 14954611 14956607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1381 2 277 WRKY Transcription Factor Family AT2G24570 49.524 3.33e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso15g1381 WRKY 7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1381 - - gmx:100127386 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1381 15 14954611 14956607 Gso9g0524 9 5795549 5797698 GST
Gso13g0738 13 21668752 21670390 Gso15g1381 15 14954611 14956607 PCT
Gso17g0479 17 4331943 4333609 Gso15g1381 15 14954611 14956607 PCT
Gso15g1381 15 14954611 14956607 Gso13g0738 13 21668752 21670390 PCT
Gso15g1381 15 14954611 14956607 Gso17g0479 17 4331943 4333609 PCT