Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1376 ATGAGTTTCCTGAACGCTTCTTCGCCGCGCTACGCGGCGGAGAGTGACATAGAGGCCGGTACCTCCGCTCGCCGCTCCGCCGACCTCGACGACGGTGATTTCTCCGATCCCTTTGACATTGCCAGGACCAAGAACGCTTCGGTTGAGCGCCTCAGACGCTGGAGGCAAGCTGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGAGCACACGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGTGGGGCCAGGGAGTGAACCCATTAAACCTCCTCCGATCCCCACTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGACACTGCTGCTCTGCAACAATATGGAGGGGTTGTAGGACTATCAAATTTGTTGAAAACCAATTCGGAGAAGGGTATTCATGGTGATGATGCTGACTTACTAAAACGAAGGAATGCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAAATTTTCTGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCGGCTTCATTGGCACTTGGGATAAAATCTGAGGGTATCAAGGAAGGATGGTATGATGGGGGTAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGCCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAAATTGTCCATAAGGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTCACTGGTGTTGGTATCAATACTGAGTGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACGGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATCGGTATTGTAGGACTTACTGTTGCTGTTATTGTCCTAATTGTGCTACTGGCTAGATATTTCTCTGGGCATACTAAAAACCCAGATGGGTCGGTTCAATTTATAGCAGGCAAGACTAAAGTTGGTGATGCTATTGATGGTGCAATAAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTACCAGAGGGGCTCCCATTAGCAGTTACTTTAACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCCTTGGTAAGGAGGCTTTCTGCCTGCGAGACCATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGTACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTACGCGGGGGGTAAGAAAATTGATCCTCCTCACAAGTTGGAGTCCTATCCTATGCTTCGCTCTCTGCTCATTGAAGGTGTTGCACAGAACACTAATGGCAGTGTTTATGCACCTGAGGGTGCCAATGATGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAATGGGGAATACAGATTGGGATGAATTTTATGGCAGCTCGATCTGAATCATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATTCAAACGGCTGACTGTAACATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGCTATGTTGATGTGAATGACCAGCTGGTGGGGATGGATGAGGAAAAGATGACATTTTTCAAAAAAGCTATTGAAGACATGGCTGCAGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAAGTTCCAACTAATGAAGAACTACTTTCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTAGCCATTGTTGGTCTTAAGGATCCTTGTCGACCTGGTGTCAAACAGGCTGTGGAACTTTGCCAAAAAGCTGGGGTTAAGGTGAAAATGGTCACTGGTGATAATGTGAAAACTGCAAAAGCAATTGCTTTGGAATGTGGAATACTTAATTCATATGCTGATGCTACAGAGCCAAACATCATTGAAGGGAAAACATTTCGTGGCTATTCAGATGCACAGAGAGATGAAATTGCTGACAGGATATCGGTCATGGGACGGTCATCTCCCAATGACAAACTATTGCTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGGCCGATATAGGTCTAGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGATCCCCAGTGGGTCGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTGCTCAATTTCCGAGGCATAAGCATACTGGGTCTGAGCCATGACAGAAAAGCTCATGCAATCAAAGTGAAGAATACTTTGATATTCAATGCATTTGTTCTCTGTCAAATCTTTAATGAATTTAATGCTCGAAAGCCAGATGAATTCAACATATTCAAAGGAGTCACAAGAAACTACCTCTTTATGGGTATCATTGGATTAACGGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGCAAGTTTACATCAACAGTGAGGCTTAATTGGAAGCATTGGCTCATCTCTGTCGTTATTGGATTGATTGGTTGGCCTCTTGCTGTGATTGGGAAATTGATACCGGTGCCAACAACTCCCATCAACAACGTTTTTTCAAAATTTCGAATTTCTAGAAAGAAGGAACCTGAGGAATCTCAATAG 3249 0.4321 MSFLNASSPRYAAESDIEAGTSARRSADLDDGDFSDPFDIARTKNASVERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGVGPGSEPIKPPPIPTAGEFPIGQEQLASISREHDTAALQQYGGVVGLSNLLKTNSEKGIHGDDADLLKRRNAFGSNNYPRKKGRNFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHTKNPDGSVQFIAGKTKVGDAIDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYAGGKKIDPPHKLESYPMLRSLLIEGVAQNTNGSVYAPEGANDVEVSGSPTEKAILQWGIQIGMNFMAARSESSIIHVFPFNSEKKRGGVAIQTADCNIHIHWKGAAEIVLACCTGYVDVNDQLVGMDEEKMTFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTNEELLSHWSLPEDDLILLAIVGLKDPCRPGVKQAVELCQKAGVKVKMVTGDNVKTAKAIALECGILNSYADATEPNIIEGKTFRGYSDAQRDEIADRISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGISILGLSHDRKAHAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTRNYLFMGIIGLTVVLQIVIIEFLGKFTSTVRLNWKHWLISVVIGLIGWPLAVIGKLIPVPTTPINNVFSKFRISRKKEPEESQ* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1376 1082 Pfam Cation transporting ATPase, C-terminus 879 1056 IPR006068 -
Gso15g1376 1082 CDD P-type_ATPase_Ca_PMCA-like 169 927 - -
Gso15g1376 1082 SUPERFAMILY HAD-like 485 899 IPR036412 -
Gso15g1376 1082 Gene3D - 497 694 IPR023299 GO:0000166
Gso15g1376 1082 Gene3D - 484 839 IPR023214 -
Gso15g1376 1082 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 1058 IPR023298 -
Gso15g1376 1082 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1072 - -
Gso15g1376 1082 MobiDBLite consensus disorder prediction 1 28 - -
Gso15g1376 1082 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 136 1058 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso15g1376 1082 Pfam Cation transporter/ATPase, N-terminus 145 212 IPR004014 -
Gso15g1376 1082 SUPERFAMILY Calcium ATPase, transduction domain A 265 360 IPR008250 -
Gso15g1376 1082 Pfam E1-E2 ATPase 265 465 - -
Gso15g1376 1082 Gene3D - 46 101 - -
Gso15g1376 1082 Gene3D - 168 363 - -
Gso15g1376 1082 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 78 IPR024750 GO:0005516
Gso15g1376 1082 Pfam haloacid dehalogenase-like hydrolase 484 808 - -
Gso15g1376 1082 SMART Cation_ATPase_N_a_2 143 217 IPR004014 -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 311 325 - -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 687 698 - -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 709 719 - -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 794 813 - -
Gso15g1376 1082 PRINTS P-type cation-transporting ATPase superfamily signature 818 830 - -
Gso15g1376 1082 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 699 IPR023299 GO:0000166
Gso15g1376 1082 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Gso15g1376 1082 PANTHER CATION TRANSPORTING ATPASE 27 1072 - -
Gso15g1376 1082 SFLD p-type atpase 469 846 IPR044492 -
Gso15g1376 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 761 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1376 1082 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 428 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1376 1082 PRINTS Sodium/potassium-transporting ATPase signature 230 250 - -
Gso15g1376 1082 PRINTS Sodium/potassium-transporting ATPase signature 480 501 - -
Gso15g1376 1082 PRINTS Sodium/potassium-transporting ATPase signature 605 623 - -
Gso15g1376 1082 Gene3D - 195 1045 - -
Gso15g1376 1082 SFLD C1.7: P-type atpase like 469 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1376 Gso-Chr15 14830364 14861292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1376 1 1077 Primary Pumps ATPases AT5G57110 74.421 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1376 K01537 - gmx:100792945 2053.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1376 15 14830364 14861292 Gso9g0517 9 5701917 5723153 GST
Gso13g0735 13 21623549 21649377 Gso15g1376 15 14830364 14861292 PCT
Gso17g0485 17 4376584 4401926 Gso15g1376 15 14830364 14861292 PCT
Gso15g1376 15 14830364 14861292 Gso13g0735 13 21623549 21649377 PCT
Gso15g1376 15 14830364 14861292 Gso17g0485 17 4376584 4401926 PCT