Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1375 ATGGAAAACCCTATATATAAAGCTCGGAGAACTCCCCGCACACTCACCCTCCGCCGCCGTTGCAAGCAGTGCACAACATCGATTATCCAAATGGGCGAAGCAAAGGCGTTGGTTCCGGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCGAAGAAGCAGGAACTCGATGCCGCTAAGAAAATGAGGTTCGAAACGCGGAAGCTGATTTTTAACAGAGCCAAACAATACTCAAAGGAATACGACGAGCAGCAAAAGGAACTGATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATCCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCTACAGTGAATATGCTCCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTGAAGAGTGTTAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTGCTTTGACAGACAACTCTATTATTGAACAGACTTTGGGGAAGCATGGGATCATTTGCGTTGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCCAACAATTTTCTGTGGCCTTTCAAGCTCAAAGCACCCCTGGGTGGTCTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAG 819 0.4469 MENPIYKARRTPRTLTLRRRCKQCTTSIIQMGEAKALVPESVVKKEKRNEEWALAKKQELDAAKKMRFETRKLIFNRAKQYSKEYDEQQKELIRLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEQTLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1375 272 Pfam Ribosomal protein L30p/L7e 114 164 IPR016082 -
Gso15g1375 272 Pfam Ribosomal L30 N-terminal domain 38 109 IPR012988 -
Gso15g1375 272 TIGRFAM uL30_euk: 60S ribosomal protein uL30 39 272 IPR005998 GO:0000463|GO:0003735|GO:0022625
Gso15g1375 272 CDD Ribosomal_L7_archeal_euk 113 272 IPR035808 -
Gso15g1375 272 SUPERFAMILY Ribosomal protein L30p/L7e 113 272 IPR036919 -
Gso15g1375 272 Coils Coil 78 98 - -
Gso15g1375 272 ProSitePatterns Ribosomal protein L30 signature. 132 164 IPR018038 -
Gso15g1375 272 Gene3D - 113 216 IPR036919 -
Gso15g1375 272 Gene3D - 217 272 IPR036919 -
Gso15g1375 272 PANTHER 60S RIBOSOMAL PROTEIN L7 24 272 IPR039699 -
Gso15g1375 272 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 24 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1375 Gso-Chr15 14813593 14816169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1375 32 272 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.062 2.28e-155 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1375 K02937 - gmx:100500011 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1375 15 14813593 14816169 Gso9g0515 9 5655917 5658619 GST