Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1371 ATGGAGAATATTGGAGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAACTTGGCAGTTGGGGATTGGATGAGGCTTTATCAGGGTACTACGATTCGAGTTCCCCGGATGGTGCCGCTTCATCTGCAGCATCAAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAACTCAATGAAAGGCTCTTTGCGCTTAGATCGGTGGTACCTAACATTAGCAAGATGGACAAGGCTTCGATTATTAAGGATGCTATTGATTACATCCAGCACTTGCACGAGCAAGAGAAGATTATCCAAGCTGAGATAATGGAACTTGAATCAGGGATGCCAAAGAAGAGTCCAAGTTATGATTTTGAGCAGGAGCTGCTTCCTGTGGTTCTCAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGATTGTGTTACTTCAAGAAACTCCCCAATTGAAGTCCTTGAGCTGAGGGTTACACACATGGGGGAGAAAATTGTTGTGGTCAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGTGAAGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATCACTTCGTTTTCAGATAGGCTTTTGAAGATAGTCTTCATTGAGGCAAATGAAGATGAGAAAGATCATTTGCAGATAAAGATCCAGACAGCCATTAAAGCTCTTAATGACCCTTTAAACCCCATGAGCATTTGA 732 0.4303 MENIGEEYKHYWETNMFLQTQELGSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMELESGMPKKSPSYDFEQELLPVVLRSKKKRTEQLYDCVTSRNSPIEVLELRVTHMGEKIVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSDRLLKIVFIEANEDEKDHLQIKIQTAIKALNDPLNPMSI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1371 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Gso15g1371 243 SMART finulus 53 102 IPR011598 GO:0046983
Gso15g1371 243 Gene3D - 44 112 IPR036638 GO:0046983
Gso15g1371 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Gso15g1371 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Gso15g1371 243 Coils Coil 213 233 - -
Gso15g1371 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Gso15g1371 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1371 Gso-Chr15 14587833 14596379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1371 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 63.470 1.94e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g1371 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1371 - - gmx:100817061 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1371 15 14587833 14596379 Gso9g0509 9 5504544 5513305 GST
Gso13g0730 13 21554306 21561362 Gso15g1371 15 14587833 14596379 PCT
Gso17g0492 17 4470874 4477713 Gso15g1371 15 14587833 14596379 PCT
Gso15g1371 15 14587833 14596379 Gso13g0730 13 21554306 21561362 PCT
Gso15g1371 15 14587833 14596379 Gso17g0492 17 4470874 4477713 PCT