Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1366 ATGCTTCGGGAACAACCACACCGTCACTGCTTCAGAGCCATTCAAAGTTCAGATCTTTATCCATCTTTTCTCTTCCATTGCAGGGGTGATACAGAATCAATTAATATGCGGGATGTGAATAATTTAAATAACAAAGGATCTGGAAAATCTAGTTACTCACAGGAACAGACTAAGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAACGCCAAGAGAAGAAACACAAAGTGAGGTCAAAATCTCATAAACACAGAGCTGGTACAAGCAAATCAAAGAAGACAGTTACACATTCTTCTGTCGAGGCACCACTTGAGGATTCTTCAAATAAAAAAGTGATTATTAGAAAATATCGGCATAAAACTGATGGGAAATCTTCACAGATGCTGTCTTCAACAAAGCTAGAAGGAGGAAAAAATTCTCATAGTTCTGGAATAGAGGGGAATGATGTTGATGGGGAGGCAAAGATTAAAAAACGTAAGAGAAGAAAGAAGAAAAGACAAAGGAATAACATAGATGTTGATGATGCTTCACGCTTGCGAAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAAAAGATTAGGCCAGAAAAGGAGCTACTACGAGCAAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGCGATGCCATACACCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGCCATTGCTCCAGATGGATCTGTTTATCATGAAAATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACTTGCAATCGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCCTAGACAGTAATTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGACATTGCATTACTAAATCCTGAAGAAGAATGGCCATCAGACGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAACCACAACTTTGACACAGAAGGAGCTGATGAAAATGCATCCAATGATTCAACCAGTTGTTCCAGTCTGTTGTCTTTGAATGGCGAATGTCCTCCAGTAGATGAAGGCATCTGTCATGAATATTATTCTGTTAATAGCTGCTTAGATTCTGATGAATCTGGGGAAATAGCATGTGGTCCTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTATGGGAAGGATGCTCCACCTTGTGAACAAATGAGTGAAGATGAAGATTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCAGATGCTGTCAATACTCTTATGACTCTGCATGAAAGTGAGAATAAACATTCTGATAATGAGAAAAATGATAGAACGAGAGAAGGTTCTTCAGGCATACAAATAAGAAGATCTTGTTTCAGGATTCCGCTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAGCCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACTTCTAAGATCACAAAGGATTCTATATCTCAAAACGAGGAGAAAGATGAGCTTTTGAAATCAAAGGTCTCCAAAATTACTGTGATTCATTCCAAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAAATTATCTAACATTCTTTTGAAGAAAAGGCAACAAAAAATATCTCCACCTTTAGCAAGAGAAAATGGCAACAAGGACTCTATGGAGATCAGTAATGATGTTAAGTTGAAGAAACTGTTGAAAAAAAGGAAAAGAGGGGTAAATATTATATTTGAAGGAGACTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCGGCAAAGTAAAGATGAAACTAGATAGCATGAAGCAAAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATGAACTCTATTTAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGATTGAATAA 2259 0.3834 MLREQPHRHCFRAIQSSDLYPSFLFHCRGDTESINMRDVNNLNNKGSGKSSYSQEQTKSKLVSSKFKTSSTKRQEKKHKVRSKSHKHRAGTSKSKKTVTHSSVEAPLEDSSNKKVIIRKYRHKTDGKSSQMLSSTKLEGGKNSHSSGIEGNDVDGEAKIKKRKRRKKKRQRNNIDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIHQLDSLSSVGSIEDSAIAPDGSVYHENIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSNWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDNHNFDTEGADENASNDSTSCSSLLSLNGECPPVDEGICHEYYSVNSCLDSDESGEIACGPRQRKAVDYKKLYDEMYGKDAPPCEQMSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHSDNEKNDRTREGSSGIQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSKITKDSISQNEEKDELLKSKVSKITVIHSKKDGKNITGKEKNKLSNILLKKRQQKISPPLARENGNKDSMEISNDVKLKKLLKKRKRGVNIIFEGDSQAAELEFERLGKVKMKLDSMKQKLNEVQNCRAKGSNELYLNEPSIIYVPTAQLREKIE* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1366 752 SUPERFAMILY Homeodomain-like 525 588 IPR009057 -
Gso15g1366 752 SMART HOX_1 524 586 IPR001356 GO:0003677
Gso15g1366 752 MobiDBLite consensus disorder prediction 465 520 - -
Gso15g1366 752 MobiDBLite consensus disorder prediction 38 178 - -
Gso15g1366 752 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 43 728 - -
Gso15g1366 752 MobiDBLite consensus disorder prediction 501 520 - -
Gso15g1366 752 ProSitePatterns Zinc finger PHD-type signature. 270 321 IPR019786 -
Gso15g1366 752 ProSiteProfiles 'Homeobox' domain profile. 522 582 IPR001356 GO:0003677
Gso15g1366 752 MobiDBLite consensus disorder prediction 381 395 - -
Gso15g1366 752 SUPERFAMILY FYVE/PHD zinc finger 261 326 IPR011011 -
Gso15g1366 752 MobiDBLite consensus disorder prediction 363 407 - -
Gso15g1366 752 CDD PHD_PRHA_like 269 321 IPR045876 -
Gso15g1366 752 Pfam PHD-finger 269 324 IPR019787 -
Gso15g1366 752 MobiDBLite consensus disorder prediction 71 94 - -
Gso15g1366 752 Pfam Homeodomain 535 577 IPR001356 GO:0003677
Gso15g1366 752 MobiDBLite consensus disorder prediction 38 68 - -
Gso15g1366 752 MobiDBLite consensus disorder prediction 366 380 - -
Gso15g1366 752 PANTHER POLYCOMB PROTEIN PCL 43 728 - -
Gso15g1366 752 CDD homeodomain 530 577 IPR001356 GO:0003677
Gso15g1366 752 ProSiteProfiles Zinc finger PHD-type profile. 267 324 IPR019787 -
Gso15g1366 752 MobiDBLite consensus disorder prediction 465 494 - -
Gso15g1366 752 Gene3D - 524 592 - -
Gso15g1366 752 MobiDBLite consensus disorder prediction 127 149 - -
Gso15g1366 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 318 IPR013083 -
Gso15g1366 752 SMART PHD_3 269 322 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1366 Gso-Chr15 14492018 14505883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1366 172 587 Homeobox Transcription Factor Family AT4G29940 58.782 1.39e-158 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gso15g1366 PHD 9.4e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1366 - - gmx:100787118 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1366 15 14492018 14505883 Gso9g0506 9 5446047 5453096 GST
Gso13g0724 13 21512507 21518191 Gso15g1366 15 14492018 14505883 PCT
Gso17g0497 17 4513312 4519159 Gso15g1366 15 14492018 14505883 PCT
Gso15g1366 15 14492018 14505883 Gso13g0724 13 21512507 21518191 PCT
Gso15g1366 15 14492018 14505883 Gso17g0497 17 4513312 4519159 PCT