Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1334 ATGGCTGGGGACAAGGGAACCATCACTCTTGAAGAGATCAAGAACGAGACTGTTGATCTGGAACGTATTCCAATTGAGGAAGTGTTCGAGCAGCTGAAATGTACCAGGGAAGGTTTGTCCTCCACGGAAGGAGAAAACCGGCTTCAAATATTTGGACCTAACAAATTAGAAGAGAAGAAGGAAAGCAAGTTTCTCAAGTTTCTTGGGTTCATGTGGAATCCGCTTTCATGGGTCATGGAGGCTGCAGCTATAATGGCCATTGCTCTTGCAAACGGCGAAGGGAAGCCTCCGGATTGGCAAGATTTTGTAGGTATTGTTTGCTTGTTGCTGATCAACTCCACTATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCTGCTCTTATGGCCGGTCTTGCTCCTAAGACGAAGGTTCTTAGAGATGGTAAATGGAGTGAGCAGGAAGCTGCAATTCTAGTCCCTGGAGACATCATAAGCATCAAGCTAGGTGACATTATTCCTGCTGATGCTCGGCTTCTTGAGGGTGATCCACTGATGGTTGATCAAGCAGCTCTGACTGGAGAATCACTTCCTGTGACCAAGCACCCAGGGCAAGAAGTTTTCTCTGGCTCAACTTGCAAACAAGGAGAAATCGAAGCCGTTGTGATTGCGACTGGTGTGCACACATTCTTTGGAAAGGCAGCACACTTGGTTGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTTACAGCAATTGGGAACTTCTGTATTTGCTCCATTGCGGTTGGTATGCTAGCTGAGATTATAGTGATGTACCCGATTCAGCACCGCAAGTACAGGGATGGAATTGACAACCTGTTGGTGCTCTTGATTGGAGGGATTCCCATTGCTATGCCTACCGTGTTGTCTGTGACAATGGCCATTGGTTCTCACAAGCTCTCGCAGCAGGGCGCCATCACAAAGAGAATGACTGCCATTGAAGAAATGGCAGGCATGGATGTCCTTTGCAGTGACAAGACAGGAACACTCACCCTCAACAAACTCACTGTTGACAAGAACTTGGTTGAGGTCTTTGCAAAGGGTGTGGACAAGGATCATGTGATCCTTCTTGCTGCCAGGGCTGCCAGGACTGAAAACCAGGATGCCATTGATGCCGCCATTGTGGGAATGCTTGCTGATCCTAAAGAGGCAAGGGCTGGGATAAGAGAGGTGCATTTTCTACCATTCAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCTAATGGAAATTGGCACAGGGCAAGCAAAGGTGCTCCTGAGCAGATCATGGCCCTGTGCAACCTCAGGGATGATGCTAAGAAGAAGGTTCATGCTATTATTGACAAGTTTGCCGAAAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAAGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTTGATCCCCCAAGGCATGACAGTGCTGAAACCATTCGCCGAGCTCTTAACCTTGGTGTAAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAAACAGGAAGGAGACTTGGAATGGGAACAAATATGTATCCATCTGCTACATTGCTTGGTCAAGACAAAGATGCAAGTATTGCCGCACTTCCCGTTGAAGAGCTGATTGAGAAGGCTGATGGATTTGCTGGAGTTTTTCCAGAGCACAAGTATGAAATTGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTCAACGACGCTCCTGCATTGAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCTACTGATGCTGCCAGAAGTGCTTCTGACATTGTCTTGACAGAACCTGGATTGAGTGTTATTATAAGTGCTGTCTTAACTAGCAGAGCTATTTTCCAAAGAATGAAGAACTACACGATCTATGCAGTATCTATCACAATCCGTATAGTGTTTGGCTTCATGTTTATTGCACTGATCTGGAAATTTGACTTCTCACCCTTCATGGTTTTGATTATTGCCATTCTGAATGATGGAACAATCATGACAATTTCAAAGGACAGGGTCAAGCCATCTCCATTGCCTGATAGCTGGAAACTGAACGAAATATTTGCTACTGGGGTTGTGCTTGGAGGTTACTTGGCACTGATGACTGTTATTTTCTTCTGGGCAATGAAAGAGACGACGTTCTTCCCCGACAAATTTGGAGTTAGACCAATTCATGACAATCCAGATGAAATGACTGCTGCTTTGTATCTACAAGTCAGTATAGTCAGCCAGGCTTTGATATTTGTCACCCGTTCGCGCAGCTGGTCCTTCATTGAACGCCCCGGACTGCTATTAATGACTGCTTTCATTATTGCTCAGCTGATTGCTACAGTAATAGCAGTGTATGCCAACTGGGGCTTTGCAAGGATCCAAGGAATTGGTTGGGGTTGGGCAGGAGTGATTTGGCTCTACAGTATTGTCTTCTATTTCCCACTTGACCTCATGAAGTTCGCCATCCGCTACATCTTGAGTGGCAAGGCTTGGAACAATCTCCTTGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAAGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAGAGGACCCTGCATGGACTTCAACCACCAGAAACTTCTAATATCTTCAATGAAAAGAGCAGTTATAGAGAACTGACTGAGATTGCTGAGCAGGCCAAGAGAAGAGCTGAAGTTGCAAGGCTTCGCGAGCTTCACACACTTAAGGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTCTGGACATTGACACAATCCAGCAGCATTACACTGTGTAA 2868 0.4564 MAGDKGTITLEEIKNETVDLERIPIEEVFEQLKCTREGLSSTEGENRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGEGKPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLMVDQAALTGESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDKDHVILLAARAARTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDANGNWHRASKGAPEQIMALCNLRDDAKKKVHAIIDKFAERGLRSLAVARQEVPEKTKESAGAPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGGYLALMTVIFFWAMKETTFFPDKFGVRPIHDNPDEMTAALYLQVSIVSQALIFVTRSRSWSFIERPGLLLMTAFIIAQLIATVIAVYANWGFARIQGIGWGWAGVIWLYSIVFYFPLDLMKFAIRYILSGKAWNNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSNIFNEKSSYRELTEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1334 955 Pfam haloacid dehalogenase-like hydrolase 329 606 - -
Gso15g1334 955 SUPERFAMILY Calcium ATPase, transduction domain A 136 233 IPR008250 -
Gso15g1334 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Gso15g1334 955 PRINTS H+-transporting ATPase (proton pump) signature 449 467 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 PRINTS H+-transporting ATPase (proton pump) signature 564 580 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 PRINTS H+-transporting ATPase (proton pump) signature 592 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 PRINTS H+-transporting ATPase (proton pump) signature 623 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 PRINTS H+-transporting ATPase (proton pump) signature 764 785 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 Coils Coil 906 926 - -
Gso15g1334 955 CDD P-type_ATPase_H 38 845 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso15g1334 955 Gene3D - 330 629 IPR023214 -
Gso15g1334 955 Gene3D - 345 492 IPR023299 GO:0000166
Gso15g1334 955 SMART Cation_ATPase_N_a_2 19 91 IPR004014 -
Gso15g1334 955 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 38 810 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gso15g1334 955 SFLD p-type atpase 315 643 IPR044492 -
Gso15g1334 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 353 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 567 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso15g1334 955 SFLD Haloacid Dehalogenase 315 643 - -
Gso15g1334 955 PANTHER CALCIUM-TRANSPORTING ATPASE 2 935 - -
Gso15g1334 955 PANTHER PLASMA MEMBRANE ATPASE 2 935 - -
Gso15g1334 955 Gene3D - 904 955 - -
Gso15g1334 955 Gene3D - 136 220 - -
Gso15g1334 955 SUPERFAMILY HAD-like 329 639 IPR036412 -
Gso15g1334 955 Pfam Cation transporter/ATPase, N-terminus 23 85 IPR004014 -
Gso15g1334 955 Gene3D - 98 819 - -
Gso15g1334 955 Pfam E1-E2 ATPase 135 312 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 183 197 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 487 498 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 509 519 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 592 611 - -
Gso15g1334 955 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Gso15g1334 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 851 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1334 Gso-Chr15 13975082 13983866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1334 9 955 Primary Pumps ATPases AT4G30190 85.306 0.0 1658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1334 K01535 - gmx:100804422 1832.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1334 15 13975082 13983866 Gso9g0476 9 4996586 5005472 GST
Gso13g0706 13 21270445 21278462 Gso15g1334 15 13975082 13983866 PCT
Gso17g0518 17 4721890 4729212 Gso15g1334 15 13975082 13983866 PCT
Gso15g1334 15 13975082 13983866 Gso13g0706 13 21270445 21278462 PCT
Gso15g1334 15 13975082 13983866 Gso17g0518 17 4721890 4729212 PCT