Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1331 ATGGAGTGGGACAGCAATTCCGATCTCAGCGATGACGACGCCGTTTCGTATGTCCTAAACGACGACGATGATGACGCCGTTGGACCCCTCCCCTTCCCCGTCCTCCAAACGGCACCGTGCGGCTTCGTCGTCACCGACGCGCTCGACCCCGACCACCCCATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGATACCGCGCCGAGGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCGACTGTTGTTTCAGAGATTAGAAGGTGCCTTGACGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACGCCTATATATGGAGATGGTGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACAATTAAGGAATCTACTAAATCATCGGATCGGTTTCATTCTGTGCTTTCCTCGTTGAATCCTCTTCCAGTGGGCGATCGTAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGCTTCTGTTTGTAGGCGATTGTATGAGCTAACAGAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGACGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAACGATACCTTCGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAACGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCTCCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACCAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGGGTACTTTTGAGTGATACTTTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCGCGTCTGGGTCACACACTATCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTTTGGCCAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCGGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCAGGGTGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTGCTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCTGTCATCTAG 1836 0.4924 MEWDSNSDLSDDDAVSYVLNDDDDDAVGPLPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDGEITHVIGIQFFTEANIDLGPLPGSTIKESTKSSDRFHSVLSSLNPLPVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVASVCRRLYELTENEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1331 611 Pfam Galactose oxidase, central domain 357 406 - -
Gso15g1331 611 SUPERFAMILY F-box domain 191 260 IPR036047 GO:0005515
Gso15g1331 611 SUPERFAMILY Kelch motif 281 499 IPR015915 GO:0005515
Gso15g1331 611 ProSiteProfiles F-box domain profile. 210 243 IPR001810 GO:0005515
Gso15g1331 611 SUPERFAMILY Kelch motif 512 596 IPR015915 GO:0005515
Gso15g1331 611 Pfam PAS domain 39 148 IPR000014 -
Gso15g1331 611 Gene3D - 272 496 IPR015915 GO:0005515
Gso15g1331 611 Gene3D - 497 610 IPR015915 GO:0005515
Gso15g1331 611 TIGRFAM sensory_box: PAS domain S-box protein 49 147 IPR000014 -
Gso15g1331 611 Pfam F-box-like 207 245 IPR001810 GO:0005515
Gso15g1331 611 Pfam Kelch motif 519 566 IPR011498 GO:0005515
Gso15g1331 611 Pfam Kelch motif 452 503 IPR011498 GO:0005515
Gso15g1331 611 CDD PAS 38 147 IPR000014 -
Gso15g1331 611 Pfam Galactose oxidase, central domain 295 345 - -
Gso15g1331 611 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 610 - -
Gso15g1331 611 PANTHER ADAGIO PROTEIN 1-LIKE 1 610 - -
Gso15g1331 611 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 148 IPR035965 -
Gso15g1331 611 Gene3D PAS domain 32 159 - -
Gso15g1331 611 ProSiteProfiles PAS repeat profile. 34 109 IPR000014 -
Gso15g1331 611 Gene3D - 195 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1331 Gso-Chr15 13910845 13918739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1331 34 149 AGC Kinase Gene Family AT5G58140 35.043 8.87e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1331 K12115 - gmx:100802828 1223.76