Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1330 ATGTCAGATGGTCTCCGTGTAATCGAGGCTGTAATCGTCTTTGTCAAGGTTGGCATTTTGATTTGTGTGTGCCGAAGAAGAAATCAGACTGATAGTAGACCAGTAATCCCAGGTTCAAAATTTCTGACACTCGCTATTGATAAATTTCTGAATGACATGGAAAGGGAGAAGCCAATCAGGTTCACTGATCAACAGCTAAGGATTGCAACTGATAACTACTCTAACTTGTTGGGATCAGGAGGTTTTGGAACAGTTTATAAGGGAATTTTTACTAATGGGACCATGGTTGCTGTAAAAGTTCTACGTGGGTCCTCAGACAAGAAAATCGAGGAGCAGTTTATGGCAGAAGTGGGCACAATTGGCAGAATTCATCATTTCAATCTGGTTCGGCTATATGGATTTTGCTTTGAAAAAAACTTGATAGCACTGGTTTATGAGTACATGGGAAATGGCTCTCTTGATAAGTATTTGTTCCATGAAAGGAAGACCTTAGGATATGAAAAGCTTCATGAGATTGCAGTAGGGACAGCCAGAGGCATTGCTTATTTGCATGAAGAGTGCCGACAAAGAATAATCCATTATGACATAAAGCCAGGAAATATTCTCTTGGACAGGAATTTCAATCCTAAAGTTGCTGATTTCGGTTTAGCCAAGCTTTGCAACAAAGACAATACTCACATAACCATGACTGGAGGTAGGGGAACTCCAGGTTATGCTGCACCTGAACTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGTTTTGGTATGCTGTTATTTGAAATCATAGGCAGGAGAAGAAACCTTGATATTAAACGTGCTGAAAGCCAAGAGTGGTTTCCAATATGGGTTTGGAAAAGATTTGATACCGCACAACTGGGGGAGCTAATAATAGTCTGTGGGATAGAGGAAAAAAGTAAGGAGATTGCAGAAAGAATGATTAAGATAGCTTTGTGGTGTGTTCAATATAGGCCAGAATTAAGGCCCATAATGAGTGTTGTGGTGAAAATGCTGGAAGGTTCACTGGAAGTTCCAGAACCTGGGAATCCATTTCAGCACTTGATGGGTGCAGTTACCTTTGCTCATCCAGTCCAAGACTCACAGACATATAATACAACAACCACTTCATCTGGTTCTTTTGTTATGGTAACAAATTCCAGCATTATATGTGCTACTCCTATTATGAGGAAGTATGAGATTGAATTAGCCTCTAGAAATGTATGA 1233 0.399 MSDGLRVIEAVIVFVKVGILICVCRRRNQTDSRPVIPGSKFLTLAIDKFLNDMEREKPIRFTDQQLRIATDNYSNLLGSGGFGTVYKGIFTNGTMVAVKVLRGSSDKKIEEQFMAEVGTIGRIHHFNLVRLYGFCFEKNLIALVYEYMGNGSLDKYLFHERKTLGYEKLHEIAVGTARGIAYLHEECRQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNKDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDIKRAESQEWFPIWVWKRFDTAQLGELIIVCGIEEKSKEIAERMIKIALWCVQYRPELRPIMSVVVKMLEGSLEVPEPGNPFQHLMGAVTFAHPVQDSQTYNTTTTSSGSFVMVTNSSIICATPIMRKYEIELASRNV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1330 410 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1330 410 CDD STKc_IRAK 77 343 - -
Gso15g1330 410 Gene3D Transferase(Phosphotransferase) domain 1 148 349 - -
Gso15g1330 410 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 408 IPR045874 GO:0004672
Gso15g1330 410 SMART serkin_6 71 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1330 410 Pfam Protein kinase domain 75 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1330 410 SUPERFAMILY Protein kinase-like (PK-like) 55 342 IPR011009 -
Gso15g1330 410 Gene3D Phosphorylase Kinase; domain 1 47 147 - -
Gso15g1330 410 PANTHER PUTATIVE-RELATED 6 408 - -
Gso15g1330 410 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Gso15g1330 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1330 Gso-Chr15 13895704 13897405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1330 60 354 Receptor kinase-like Gene Family AT5G38280 43.607 3.99e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gso15g1330 Pkinase 9.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1330 - - gmx:100803355 827.78