Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1329 ATGATTCTTTGCCTTTTTGGTTTCTGTACAAGATCCAAGACAGAGACTGATAGCAGTTCAAACATGCATTTTCTGACTCTTGCTATGGACAAATTTCTGAGTAATATGGAAAGAGAAAAGCCAATCAGGTTTACTAGTGAGCAGCTCAGGATTGCAACTGATAACTACTCATCATTATTGGGATCAGGAGGTTTTGGAGAAGTTTATAAAGGAAATTTGAGTGATGGAATCAATGTGGCTGTGAAGGTTCTACGTGGTAACTCAGATAAGAGAATTGAGGAACAATTTATGGCAGAAGTGGGTACAATTGGAAAAGTTCATCATTTCAATCTAGTTCAGTTGATTGGATTTTGCTTCGAAAGAGATCTAAGAGCACTGGTTTATGAGTACATGGAGAATGGCTCTCTTGACAGGTATTTGTTCCATGAAAAGAAGACCTTAGGATATGAAAAGCTTTATGAGATTGCAGTTGGGATAGCCAGAGGCATCGCATACTTGCACGAAGATTGCAAACAAAGAATAATCCATTATGACATCAAACCAGGAAATATTCTATTGGACCGCAATTTCAATCCTAAAGTTGCTGATTTTGGATTAGCCAAGCTTTGCAACAGAGACAATACTCATATTACTATGACAGGAGGTAGGGGCACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTGACTCACAAGTGTGATGTTTACAGCTACGGAATGCTGTTATTTGAAATCGTAGGTAGGAGAAGAAACGTTGACACTAACCTTCCAGAAAGCCAAGAGTGGTTTCCAGTATGGGTTTGGAAAAGATTTGATGCTGGAGAATTGGTAGAGTTAAGAATGGCTTGTGGAATAGAGGAGAGACATCATAAAATGGCTGAAAGAATGGTTAAGGTAGCTTTGCTATGTGTTCAGTATAGACCAGATTCAAGACCAATAATGAGTGATGTAGTGAAAATGTTGGAAGGTTCGGTGGAAATTTCTAAACCCATGAACCCATTTCAGCATATGATGGATGGGACTATCCCTGGTCATTCAGCCCAAGCATCACAAACTGATGCTAATACAAGTGTTAATTCTGGCTCTTCTGCTACGGTAACCCAACCAGGCATTGTATATGATAATCCTATGATGAGGAATGATGACATTGAATGGACCTCTACCATTGCTGATGAATGA 1188 0.3965 MILCLFGFCTRSKTETDSSSNMHFLTLAMDKFLSNMEREKPIRFTSEQLRIATDNYSSLLGSGGFGEVYKGNLSDGINVAVKVLRGNSDKRIEEQFMAEVGTIGKVHHFNLVQLIGFCFERDLRALVYEYMENGSLDRYLFHEKKTLGYEKLYEIAVGIARGIAYLHEDCKQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSYGMLLFEIVGRRRNVDTNLPESQEWFPVWVWKRFDAGELVELRMACGIEERHHKMAERMVKVALLCVQYRPDSRPIMSDVVKMLEGSVEISKPMNPFQHMMDGTIPGHSAQASQTDANTSVNSGSSATVTQPGIVYDNPMMRNDDIEWTSTIADE* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1329 395 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 387 IPR045874 GO:0004672
Gso15g1329 395 PANTHER PUTATIVE-RELATED 5 387 - -
Gso15g1329 395 SMART serkin_6 54 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1329 395 Gene3D Phosphorylase Kinase; domain 1 28 130 - -
Gso15g1329 395 ProSiteProfiles Protein kinase domain profile. 54 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1329 395 MobiDBLite consensus disorder prediction 347 373 - -
Gso15g1329 395 ProSitePatterns Protein kinases ATP-binding region signature. 60 82 IPR017441 GO:0005524
Gso15g1329 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Gso15g1329 395 Gene3D Transferase(Phosphotransferase) domain 1 131 339 - -
Gso15g1329 395 MobiDBLite consensus disorder prediction 344 376 - -
Gso15g1329 395 SUPERFAMILY Protein kinase-like (PK-like) 35 325 IPR011009 -
Gso15g1329 395 CDD STKc_IRAK 60 326 - -
Gso15g1329 395 Pfam Protein tyrosine and serine/threonine kinase 58 324 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1329 Gso-Chr15 13892604 13893945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1329 43 346 Receptor kinase-like Gene Family AT5G38280 43.175 4.85e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gso15g1329 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1329 - - gmx:100776445 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1329 15 13892604 13893945 Gso9g0473 9 4928641 4930420 GST