Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1328 ATGTCTCCCGTAACTCTCATAATCGTGGGCTTTGCAGGTATCTTATTTGTGATATTTTGTATTTTGGTATGGCTCCAGCCCAACTGCAAATCAATACCTGCTGGAATACTTACTCCAGACTCAAAGTTTATGTCACTTACTATGGATAAATTTCTGAACGAGATGGAAAGGATGAAGCCTATCCGATTTACAAATCAGCATCTAAGAATTGCAACTGATAACTTCACTTACTTGTTGGGGTCAGGAGGTTTTGGAGCAGTCTATAAGGGAGTTTTTAGCGACGGAACAATTGTAGCTGTGAAGGTTCTACATGGGAATTCTGACAAGATAATTGAGGAGCAGTTTATGGCAGAAGTGGGGACAGTTGGCAATGTTCACCATTTCAATCTGGTTCGGCTCTATGGATTTTGCTTTGGCAGAAACATGAGAGCTCTGGTTTATGAGTACATGGGGAATGGCTCTCTTGACAAGTATCTGTTTGATGAAAATAGGACCATAGAATTTGAAAAGCTTCATGAGATTGCAATTGGGACAGCCAAAGGCCTTGCTTACTTGCATGAAGAATGCCAACAAAGAATAATCCACTATGACATCAAACCAGGAAATATTCTCTTGGACAGGAACCTCAATCCTAAAGTAGCTGATTTTGGTTTAGCCAAAGTTTGCAACAGGAAAAATACTCATATAACCCTGACTAGGGGTAGGGGAACTCCTGGTTATGCTGCCCCTGAGCTTTGGATGCCAAATTTTCCTATAACTCATAAATGTGATGTTTATAGCTTTGGCATGCTAGTATTTGAAATCCTAGGCAGGAGAAGAAACCTTGACATAGACCATGCTGAAAGCCAGGAATGGTTTCCTGTATGGGTTTGGAAAAGATTTGAGGCTGAAGAAGCAAAGGAATTAATTGTAGCGTGTGGGATAGAGGATCAAAACAGAGAGATTGCTGAAAGAATGGTTAAGGTTGCTCTATTATGTGTTCAGTATAGGCAAGAATCAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAGGGTTCAATTGAAATTCCAAAACCTCTAAACCCATTTCAGCACATGATTGATGGGACTGTTCCACTCCCAGCATCACAGACCAACACTGATACAAGTGCTGGTTCAGTTTCTTCTGTGATGGTAACTGAATCCAGCCTTCAATCTGCTCCTCCTATTGTGACGAAGCTCGAGATTGAATCAGCTTCTACCTAA 1227 0.4091 MSPVTLIIVGFAGILFVIFCILVWLQPNCKSIPAGILTPDSKFMSLTMDKFLNEMERMKPIRFTNQHLRIATDNFTYLLGSGGFGAVYKGVFSDGTIVAVKVLHGNSDKIIEEQFMAEVGTVGNVHHFNLVRLYGFCFGRNMRALVYEYMGNGSLDKYLFDENRTIEFEKLHEIAIGTAKGLAYLHEECQQRIIHYDIKPGNILLDRNLNPKVADFGLAKVCNRKNTHITLTRGRGTPGYAAPELWMPNFPITHKCDVYSFGMLVFEILGRRRNLDIDHAESQEWFPVWVWKRFEAEEAKELIVACGIEDQNREIAERMVKVALLCVQYRQESRPIMSVVVKMLEGSIEIPKPLNPFQHMIDGTVPLPASQTNTDTSAGSVSSVMVTESSLQSAPPIVTKLEIESAST* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1328 408 SUPERFAMILY Protein kinase-like (PK-like) 54 345 IPR011009 -
Gso15g1328 408 SMART serkin_6 73 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1328 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Gso15g1328 408 ProSitePatterns Protein kinases ATP-binding region signature. 79 101 IPR017441 GO:0005524
Gso15g1328 408 PANTHER PUTATIVE-RELATED 14 406 - -
Gso15g1328 408 Pfam Protein tyrosine and serine/threonine kinase 78 344 IPR001245 GO:0004672|GO:0006468
Gso15g1328 408 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Gso15g1328 408 ProSiteProfiles Protein kinase domain profile. 73 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1328 408 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Gso15g1328 408 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 406 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1328 Gso-Chr15 13872078 13873731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1328 62 366 Receptor kinase-like Gene Family AT5G38280 43.810 4.23e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Gso15g1328 PK_Tyr_Ser-Thr 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1328 - - gmx:100819737 820.846