Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1325 ATGAAGTATATTAGGAGCAACAGCTTGAAGAGGCTCTTTTCGTTTGGGAGACACGGGTTTGGGGAAGAAAACGACGTGGGGTTGGTGGTTTTTCCTTGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTTAGCTCAGAGAATGTGATTGGTAAAGGAGGGTATGCGGAGGTTTATAAGGGAATATTGAATGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACAAGAACTTCAAGGGATGAGAGAAAGGAGAAGGAGTTTCTGTTAGAGATTGGCACAATTGGTCACGTGCGTCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGATAATGGACTTTACCTCGTTTTTGAGCTATCCAACGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGCACTTGCCTCATTTGGATTGGAAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATCATTCATAGGGACATCAAGGCCTCAAACATTTTGTTGACAGCAGATTTTGAACCGAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCTCCAATAGAAGGGACATTTGGGCATTTAGCACCTGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACTGATGTATTTGCCTTTGGCGTATTCTTGCTTGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTGCACAACTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAGCTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTATTGGAGGTAATGGAGGAGTGGGAGATGGATAAAGGGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTATGGGGTTTTGAGGATCTAGAATATGAATATGACAGTTCCTTTTCAATGTCACTACCTGACTCTGTGGGAAGTACTTAG 1116 0.4534 MKYIRSNSLKRLFSFGRHGFGEENDVGLVVFPCEEHPPRPSWKCFSYEELFDATNGFSSENVIGKGGYAEVYKGILNGGEEVAVKRLTRTSRDERKEKEFLLEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSNVGSVASLIHDEHLPHLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHNWAKPILNKGEIEKLVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVLEVMEEWEMDKGKWEMPEEEEQEEELWGFEDLEYEYDSSFSMSLPDSVGST* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1325 371 Gene3D Phosphorylase Kinase; domain 1 33 133 - -
Gso15g1325 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gso15g1325 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1325 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Gso15g1325 371 Pfam Protein tyrosine and serine/threonine kinase 60 265 IPR001245 GO:0004672|GO:0006468
Gso15g1325 371 Gene3D Transferase(Phosphotransferase) domain 1 135 350 - -
Gso15g1325 371 PANTHER OS04G0654600 PROTEIN 32 352 - -
Gso15g1325 371 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g1325 371 SUPERFAMILY Protein kinase-like (PK-like) 37 327 IPR011009 -
Gso15g1325 371 PANTHER OS08G0249100 PROTEIN 32 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1325 Gso-Chr15 13813679 13818069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1325 41 360 Trihelix Transcription Factor Family AT5G38560 39.589 2.76e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso15g1325 PK_Tyr_Ser-Thr 3.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1325 - - gmx:100801765 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1325 15 13813679 13818069 Gso9g0469 9 4864405 4868962 GST
Gso13g0700 13 21212174 21217218 Gso15g1325 15 13813679 13818069 PCT
Gso17g0523 17 4780428 4785850 Gso15g1325 15 13813679 13818069 PCT
Gso15g1325 15 13813679 13818069 Gso13g0700 13 21212174 21217218 PCT
Gso15g1325 15 13813679 13818069 Gso17g0523 17 4780428 4785850 PCT