Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1312 ATGTGGAGGACAATAAGAATCCATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATAATGAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAGAAGGCCTCAAAAGATGAAGATCAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTAACTGTGGCTTTGCACTTTGGATTGCCTGACACTAATAAAGGGCATGCTGATGAGGTTGATGAGAAGATGATTGTCCATGTTAAGGAAGAAGAAGAGTCATCAAAGAGAAGCTTCCATGGTTGCCCCTTTAACAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGTAGCAAGACGTTCAATAGGTATAGCAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCAGCAGTGTTAAGGTTACCATGCTATTGCTATGCTCAAGGTTGCAAGATCAACATCAATCATCCATGGGCCAAGCCATTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAATAAAACATGGGACAAAGCCATTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTAAAGGATCATATTAGGTCTTTTGGAAAAGGACATAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATAACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 861 0.4181 MWRTIRIHTFMLLLSLSGLNHNEFVQETIQFLPILSEKASKDEDQSFEVKEEKVEQVTVALHFGLPDTNKGHADEVDEKMIVHVKEEEESSKRSFHGCPFNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYSNMQMHMWGHGSEFRKGPDSLKGTQPAAVLRLPCYCYAQGCKININHPWAKPLKDFRTLQTHYKIKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHT* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1312 286 Gene3D Classic Zinc Finger 121 144 - -
Gso15g1312 286 Gene3D Classic Zinc Finger 167 254 - -
Gso15g1312 286 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Gso15g1312 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 226 IPR013087 -
Gso15g1312 286 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 20 284 - -
Gso15g1312 286 PANTHER ZINC FINGER PROTEIN WIP2 20 284 IPR043584 GO:0003700|GO:0010468
Gso15g1312 286 SUPERFAMILY beta-beta-alpha zinc fingers 113 145 IPR036236 -
Gso15g1312 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Gso15g1312 286 SUPERFAMILY beta-beta-alpha zinc fingers 185 226 IPR036236 -
Gso15g1312 286 Pfam Zinc finger, C2H2 type 122 141 IPR013087 -
Gso15g1312 286 SMART c2h2final6 206 226 IPR013087 -
Gso15g1312 286 SMART c2h2final6 122 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1312 Gso-Chr15 13593268 13596259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1312 11 274 C2H2 Transcription Factor Family AT1G08290 59.516 1.80e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso15g1312 zf-C2H2 0.0019 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1312 - - gmx:100802773 542.732