Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1310 ATGGAGAAAGAGAAGGGAGAGGAAGAAGTGAAGTACCGCGGAGTGAGAAGAAGGCCATGGGGTAAGTTCGGAGCAGAGATCAGAGATCCAACGAAACCGACGGGAAGACAATGGTTAGGGACATTTGACACGGCTGAAGAAGCCGCTAGAGCTTATGATCGTGCAGCCATTGGTTTGAGGGGTGCTCTTGCAATCCTTAATTTTCCTGATGAGTACTATTCTCATCTTCCTTTTGTATTATCAAATTCTTCTACTAAGGGAAATGAAAGTTCTTTTGATACGGAAGTTATTGAGTTAGAGTATTTGGATGACAAGGTGTTGGAAGAACTTCTTGAGTTAGAAGAGAAGAGAAGAAATGAAGACTAA 366 0.4235 MEKEKGEEEVKYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFVLSNSSTKGNESSFDTEVIELEYLDDKVLEELLELEEKRRNED* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1310 121 SUPERFAMILY DNA-binding domain 11 71 IPR016177 GO:0003677
Gso15g1310 121 ProSiteProfiles AP2/ERF domain profile. 11 69 IPR001471 GO:0003700|GO:0006355
Gso15g1310 121 PANTHER DNA-BINDING DOMAIN 2 115 IPR044808 GO:0003700|GO:0009873
Gso15g1310 121 Pfam AP2 domain 11 61 IPR001471 GO:0003700|GO:0006355
Gso15g1310 121 PANTHER ETHYLENE RESPONSE FACTOR 2 115 - -
Gso15g1310 121 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Gso15g1310 121 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Gso15g1310 121 SMART rav1_2 11 75 IPR001471 GO:0003700|GO:0006355
Gso15g1310 121 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Gso15g1310 121 CDD AP2 12 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1310 Gso-Chr15 13508397 13508802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1310 7 118 AP2-EREBP Transcription Factor Family AT3G23230 57.600 4.75e-41 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g1310 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1310 - - gmx:100797513 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1310 15 13508397 13508802 Gso9g0453 9 4593755 4594276 GST