Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1309 ATGGAGGAGGCACATAAGGGGGAGCAAGACAAAGAGAAAGGAGGGGAAGAAGTGAAGTACCGTGGCGTGAGAAGGAGGCCATGGGGTAAGTTCGGAGCAGAGATCAGAGACCCAACAAAATCTACAGGAAGACAATGGTTAGGGACATTTGACACGGCGGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGGGGTGCTCTTGCAATCCTTAATTTTCCTGATGAGTACTATGCTCATCTCCCTTTTGTATCATCAAACCCTTCTATTTCAAGTAATGGAAGTTCCTATGCTGCACAACAGAAGGAGGTTATTGAGTTTGAGTGTTTGGATAACAAGGTGTTGGAAGACCTTCTTGAGTCCGAAGTGAAAAGAAGGAACGAGGACTAA 399 0.4561 MEEAHKGEQDKEKGGEEVKYRGVRRRPWGKFGAEIRDPTKSTGRQWLGTFDTAEEAARAYDRAAIELRGALAILNFPDEYYAHLPFVSSNPSISSNGSSYAAQQKEVIEFECLDNKVLEDLLESEVKRRNED* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1309 132 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Gso15g1309 132 PANTHER DNA-BINDING DOMAIN 1 126 IPR044808 GO:0003700|GO:0009873
Gso15g1309 132 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Gso15g1309 132 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Gso15g1309 132 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Gso15g1309 132 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Gso15g1309 132 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Gso15g1309 132 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Gso15g1309 132 PANTHER ETHYLENE RESPONSE FACTOR 1 126 - -
Gso15g1309 132 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1309 Gso-Chr15 13500134 13500572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1309 1 129 AP2-EREBP Transcription Factor Family AT3G23230 52.518 2.58e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g1309 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1309 - - gmx:100796977 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1309 15 13500134 13500572 Gso9g0452 9 4577350 4577977 GST