Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1293 ATGGCTGAAACTCACTCATTCACTCACACTCCCTTAATGACACCCACTATCAGCCCCACCAGAAGCAAACCATGCAACCCTCCAGAACACAGCATCAACTTGATGGTTGTGTTAGCAGTCATAGTGTGTGCCTTCCTATGCGCTCTTGGTCTCAACACAATGCTGCAATGTGTGTTCCAATGTGCCAATCGCATTCTCACGGAGCCCCTTCAGTGGATTGCCTCAAGGAGGCTCAATTCTGGCCTCAAGAAGACAGAAATGGTGGCTTTGCCAACCTCAACTTACACTCATTCTTGTGCCTCTCCATCTTCGCCCTCCAATAATATTTGTGCCATTTGCTTAACGGAATTCTCTGATGGGGATAGGATAAGGTTCCTGCCAAACTGCAATCACCGTTTTCACGTTGATTGCATTGATAAGTGGCTGCTTTCTCACTCTTCTTGCCCAACTTGTAGGAACTTGCTCAAGCCCACTGATTCAGTACACTCCTTGCATACTGTAGTATCATAG 510 0.4686 MAETHSFTHTPLMTPTISPTRSKPCNPPEHSINLMVVLAVIVCAFLCALGLNTMLQCVFQCANRILTEPLQWIASRRLNSGLKKTEMVALPTSTYTHSCASPSSPSNNICAICLTEFSDGDRIRFLPNCNHRFHVDCIDKWLLSHSSCPTCRNLLKPTDSVHSLHTVVS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1293 169 MobiDBLite consensus disorder prediction 1 24 - -
Gso15g1293 169 SUPERFAMILY RING/U-box 96 158 - -
Gso15g1293 169 SMART ring_2 110 151 IPR001841 -
Gso15g1293 169 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 164 - -
Gso15g1293 169 Pfam Ring finger domain 109 152 IPR001841 -
Gso15g1293 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Gso15g1293 169 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Gso15g1293 169 PANTHER OS06G0666500 PROTEIN 16 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1293 Gso-Chr15 13298299 13299108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1293 20 157 C3H Transcription Factor Family AT2G17450 41.096 6.22e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1293 - - gmx:100803003 353.984