Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1287 ATGGCTTCTTCTATTCATCTTTATCAACCAACCAACACCTTATTCTCCAAAACCCAGTTCAAGGGCTCGCGCCGTGGCTTCTTGTGGAAACCCAGTTACTCGTTCGGCTCTCGTGCTGAAAACAGAGCACGACCCATCAGAGCTTCGGTTGGTGCTCCCCCATTTCCCCTGTTTCAGCCTCCCCAAGTTGAAGAGACAACATCGTCTGAGTTGGAGCCCGCTGATCCTGATTTCTACAAGATTGGTTATGTCCGAAGTATGCGAGCTTATGGAGTTCAGTTTAAAGAAGGGCCAGATGGTTTTGGAGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCGTGGATGTTTTTCCCTGATATAATTCCCTTGGATCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGTGAAGGCAACTTTTGGCAATTGTATGGCGACTTCTTACCGAGTGCAGATGAGTGCACTAGCTTACTTCTTGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCTGATCTTGCTTCCACTATTAGAAAACAGCAACAACGATCCTTAGAATTCTGGGAGAATAACTGGCACAGTGATGTACCCCTTAAAATAAAGCGTCTTGCGCGTGATCCTCAAAGGTTTGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAGCAGATTAGGAAGGGAGATGAGATGACAGTTAATTACATGAGTGCTCAGAAGAATGACATGTTCATGCAAAGATATGGATTTTCATCACCCGTGAGTTGCTTACAATTGCAGAATCCTTGGGACAAGATCAAATTCTCAGGCAATGCGCGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCCTGAAGAGTATTACCATAATAATTGTCTGTCAAAAGCCGGAGATAGTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAACTTGGTCAGATGGGGATGTGCCTCCAATCCCTAGCATGGAAAGAAAGGCTGCGAAGGAGTTGCAAGATGAATGTCAAAAGATGCTTGCAGAATTTGCTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCAATGGCAGATGCTACGAGGACACTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTCATGGAGAAAGTTTTCCAAGCATTGGAGATGTATCAAGAGCAAATACTGTTCTGA 1470 0.4293 MASSIHLYQPTNTLFSKTQFKGSRRGFLWKPSYSFGSRAENRARPIRASVGAPPFPLFQPPQVEETTSSELEPADPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLACLLLYAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPDLASTIRKQQQRSLEFWENNWHSDVPLKIKRLARDPQRFAWAVGIAQSRCINMQTRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVNYMSAQKNDMFMQRYGFSSPVSCLQLQNPWDKIKFSGNARIHLDSFLSIFNISGLPEEYYHNNCLSKAGDSFVDGAVIAAARTLPTWSDGDVPPIPSMERKAAKELQDECQKMLAEFATTSKQDQKLLDSMADATRTLEAAIKYRLHRKLFMEKVFQALEMYQEQILF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1287 489 Pfam Rubisco LSMT substrate-binding 418 470 IPR015353 -
Gso15g1287 489 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 362 482 IPR036464 -
Gso15g1287 489 Coils Coil 424 444 - -
Gso15g1287 489 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Gso15g1287 489 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 481 - -
Gso15g1287 489 Pfam SET domain 100 323 IPR001214 GO:0005515
Gso15g1287 489 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 481 - -
Gso15g1287 489 CDD SET_LSMT 91 338 - -
Gso15g1287 489 Gene3D - 376 487 IPR036464 -
Gso15g1287 489 ProSiteProfiles SET domain profile. 79 324 IPR001214 GO:0005515
Gso15g1287 489 SUPERFAMILY SET domain 99 339 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1287 Gso-Chr15 13209792 13216624 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso15g1287 SET 3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1287 - - gmx:100790985 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1287 15 13209792 13216624 Gso9g0427 9 4259785 4267937 GST