Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1280 ATGGCATCGTCCCAGGTTGAAATCGCTTCTTCTTCGCCGTTTGGTTGCGTTTTGAGGGACCGCAATCACCGCGAAGCATGCAGCAGGGAAAGCAGCAACGTGAAGGGCACGCATCATCATGCTACGTTCCAAAGAAACATGAAGAACTTTGTGATGGACCTTAACACGTGCATGGTAGTGTCTTCTGATTCGACAACAAATAAAAATGAAAACAACAGCAGCAGCAGCAACAACAACCAGCGGAAGGCTCCAAAAAACAGCCACCTAGAGAGGCTTCGTATCACACCAGCCAACCCCTTTATTAACAACAACAACATCAACAACAATGAAACCTCGTTGGCCTCGTTGATCAGCCCGAGACACTCGCGGCTTCTCGATCGATGGGCCACGAGACAGGGTTGCCAGATGGTGTCGAATTTGGAGAATGAGGCAGAGTTGTTGTCGATGGACGACAATGACATGCTTCCAAGGACTTCTAGTTCCTCCGAGGAGGAGGACTCATCCTCGGAGACTCAAAACCTGGGTGGTGCCTCTTCTCTTGTTCAGATATGGGAGAAGAGGCTGAACCAATCCGGTGTCTCCAAACCCAATACACCAAGGGAGAGGATTGGTTCGACCTCTTCTTCCATAAATGAGAATGCTAATGCTTTCTCTTCGGAGAATGCTAATGCTCTCACTGGGGAGGAACAATGCTTTGATGGACCCTCAGGGAACGAAGAATCTTTGTTCCCTGATTGGGAATCTAGTGATCATTCCCTTTCGCCAAGTGGCAGGTCGGAGAGGGACAGGGTCAGGGTTGCTGACATCATAAAGAAACTCACTGCTACAAACCCGAATCAGAGTCCAACACCTTCCTTTGCTGATGACAATGAACATGAAGGGTATGGTAGCAGCGTGACAGGTTCTCCTTGTAGGGAGCGTGAATGTGGTAATCAACAACAACAACAACAACATTCGGAGCAGAACCAGAGAGTTAATTGTTCCTTGCGAATTAGAGGGCGCCGGGCATACAATGATTTGCTTGCACAGATGAAGAATGACAGGCATGGGGAGCTTAACAACCTGGTAGAGCGTGGAGCAGTCTCCAAGTTCCCACAAAGAGGTCGCATTCAGGCATTGCTTCGACTTAAATTATTGCAACGTGGCACGGCAGCTAATGATTCGACCCGCCAGAAATCAGCAGCATCTGAAGTAAACAACAGACAGCCACAGGGATCTGCAATTATGCAATTAAGGGAAAGGTTTAGCAGTGGGGCTGAACTTAGAACTGCAGTCCTGGCAGAAGTAGCTAATCCAAAAAGTCCTCAAAGGGGGACAGCAAACAAAACCACACAATTGGATAACTCTGCCACCACTGATCATCTGAGCAAAGACACAAGCAACAATAAAGGTCATGGCAATGCCAATCATGCCACAGAATCCACACAAAAGTCGGCGTCACAGACTAGAATAGATCATAACACAGAAGAAGCTCATCCAAGTTCAGATGTCAAGGTCCAAGAAACACGTCCAAGTTCAGATGTCAAGACTCCACACAATGACTCACAAGAAACTACCGAGGCAAGTTCATCCACGATTGGTTCAAATCTAAATGAGATAATGGCAGATAGGGCAGAGACGAGCAACCAACAGAATGCTATGGCTAAAAGCAGTAATGATGAGACATTGGATGAGGAAGTGGAAAGTTACCAGAAGTATGCCGAAACCAGTTATGAGGAGACAGTAGAAGAGGCAAGTAATCACAACTGTGGTGATGGGATGGAGGAAGAGGTAGAGGAAATTGAACAGAATTGTTATGAAACTAATTATGACTGGATCAGTGAAATTTCTAGGCCTAGGAGCTATTGGGAAGAGCGCAGGCAAGCATGGTATAGAGAGATGCTTGAAACTGGTTCTCAAAATGAAGATATACGAAGGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTCAGGGATAGAATGGATAGATTGATGGAATCTCATAGAGGAACACAAACACATCTAGTCAGTAGTCAAGACCGTGAGGAAGATAGTCATGGATTGATGGCATTTTTACAAGAACGCTTGCATTCTACAATAGCTTCTCAAGATGGAAGACATGCGAGGGAGGAAGAAGAGGAGGAGAGTAGAAATCAAAATGAGGAAGAGGAAGAAGAAGAGGAGGAGGATAATGCAGATGAGCAGGAGCAGGAGCATGAGGAGGAGAGCTTGATAAGTGGTTTGTATCATGAAGCTGGCGATTATTCTAATGGATCCTCATCATGGAGTTACAGGGACATCGAAGCTGGTTATGATTTCGATAGAGTTGTTTCTACATCCCCACAACCTTATCAATCTCAATCTTTCTATCCAGAAAGTCGGCACTCTCCATCCACCAATCATCATTCAATTGAAATGGAACTCATATATGATTTGAGAGGGCATATGGAGCTACTTTATAATGAGATATCTGAGCTAAGGAAATCAATAAAGGGCTGCATGGAAATGCAGATAGAATTACAACAATCCATGAAACAAGAGGTTCAAACAGTTAAAAAAGAAGAAAAGAAGTCCAATAACAGGACTCCAAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTTGACTCAGTTTTGTACAGGTGTGGACACATGTGTACATGTCTCAAGTGTGCCAACGAGTTGCAATGGAACAGTGGAAAATGTCCTATATGTCGTGCTAAAATAGAGGATGTTGTTCGCGTATATGTTGACGGTTAG 2754 0.4481 MASSQVEIASSSPFGCVLRDRNHREACSRESSNVKGTHHHATFQRNMKNFVMDLNTCMVVSSDSTTNKNENNSSSSNNNQRKAPKNSHLERLRITPANPFINNNNINNNETSLASLISPRHSRLLDRWATRQGCQMVSNLENEAELLSMDDNDMLPRTSSSSEEEDSSSETQNLGGASSLVQIWEKRLNQSGVSKPNTPRERIGSTSSSINENANAFSSENANALTGEEQCFDGPSGNEESLFPDWESSDHSLSPSGRSERDRVRVADIIKKLTATNPNQSPTPSFADDNEHEGYGSSVTGSPCRERECGNQQQQQQHSEQNQRVNCSLRIRGRRAYNDLLAQMKNDRHGELNNLVERGAVSKFPQRGRIQALLRLKLLQRGTAANDSTRQKSAASEVNNRQPQGSAIMQLRERFSSGAELRTAVLAEVANPKSPQRGTANKTTQLDNSATTDHLSKDTSNNKGHGNANHATESTQKSASQTRIDHNTEEAHPSSDVKVQETRPSSDVKTPHNDSQETTEASSSTIGSNLNEIMADRAETSNQQNAMAKSSNDETLDEEVESYQKYAETSYEETVEEASNHNCGDGMEEEVEEIEQNCYETNYDWISEISRPRSYWEERRQAWYREMLETGSQNEDIRRLLERRTVSSFLSSDFRDRMDRLMESHRGTQTHLVSSQDREEDSHGLMAFLQERLHSTIASQDGRHAREEEEEESRNQNEEEEEEEEEDNADEQEQEHEEESLISGLYHEAGDYSNGSSSWSYRDIEAGYDFDRVVSTSPQPYQSQSFYPESRHSPSTNHHSIEMELIYDLRGHMELLYNEISELRKSIKGCMEMQIELQQSMKQEVQTVKKEEKKSNNRTPKKGNCCICYEMKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAKIEDVVRVYVDG* 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1280 917 MobiDBLite consensus disorder prediction 434 482 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 383 407 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 552 568 - -
Gso15g1280 917 Coils Coil 703 742 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 62 83 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 712 737 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 62 88 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 227 324 - -
Gso15g1280 917 ProSiteProfiles Zinc finger RING-type profile. 865 904 IPR001841 -
Gso15g1280 917 CDD mRING-HC-C3HC5_NEU1 864 904 - -
Gso15g1280 917 SMART ring_2 865 903 IPR001841 -
Gso15g1280 917 PANTHER BNAC05G24000D PROTEIN 1 916 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 304 324 - -
Gso15g1280 917 PANTHER BNAC05G24000D PROTEIN 1 916 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 540 568 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 188 212 - -
Gso15g1280 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 839 916 IPR013083 -
Gso15g1280 917 MobiDBLite consensus disorder prediction 147 176 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 427 526 - -
Gso15g1280 917 SUPERFAMILY RING/U-box 864 909 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 699 740 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 273 287 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 254 269 - -
Gso15g1280 917 MobiDBLite consensus disorder prediction 483 514 - -
Gso15g1280 917 Pfam Zinc finger, C3HC4 type (RING finger) 862 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1280 Gso-Chr15 13072748 13078029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1280 865 913 C3H Transcription Factor Family AT3G06140 42.857 1.18e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1280 - - gmx:100796627 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1280 15 13072748 13078029 Gso9g0414 9 4099318 4104519 GST