Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1273 ATGGAAGCATACGGCGGCTTCATGGTCGACGAGAAAGCCGTTAGGGTTGAGAACGCTTTCCTTGATTTCCTCAAAAGCTTCAAGTCTAGTAGCCAGCGGAACGAACTTTATTACGAAGCGGAGATCGAATTGATGAAGAGCAATGAATCCAACAGCATGTTCATCGATTTCGACCACGTCATCAGATTCAGCGACCTCCTCCAGCAAACCATCTCCGATGAATACTTGAGATTTGAACCTTATTTGAAGAACGCTTGCAAGCGGTTTGTTATGGATCTCAAGCCATCACTTGTGTCCGACGATAGCCCTGACAAGGACATCAATATTGCCTTCTATAACATGCCCATTGTTAAAAGGTTAAGGGAATTGGGTACATCAGAGATCGGAAGGCTTGTGTCTGTGACAGGAGTGGTGACAAGGACGAGTGAGGTTCGACCTGAACTTCTCCATGGGACTTTCAAGTGCCTGGAATGCGGTGGTGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGCGCAAATGCGACCTGTAGCAATCGAACAAGGTGGGTACTGCTGCGCCAAGAGAGCAAATTTGCTGATTGGCAGAGGGTCAGAATGCAGGAGACGTCCAAAGAGATACCTGCAGGCTCTCTTCCTAGGTCATTGGACATTATTCTTCGTCATGAGATTGTGGAACATGCCAGAGCTGGTGACACGGTGATTTTCACTGGTACTGTAGTTGTTATACCTGACATAATGGCATTGGCATCTCCGGGAGAGAGATCAGAGTGCCGCCGTGATGCTTCTCAACGCAAGGGTTCTACAGCTGGAAATGAAGGTGTGAGTGGTCTTAAGGCTCTAGGAGTCAGAGACCTCAACTATCGTCTAGCTTTTATTGCCAACTCTGCTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATGCTGATGAAGACAATCAACAGTTTACTGATCAGGAACTGGAAGAAATTAAACGGATGAGGAGCACACCAGATTTTTTCACCAAACTTGTTGAAAGCATTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCTATCCTTCTTATGCTTTTGGGTGGTGTGCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAACGTTTGTGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAATTTCTTAAGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACATCTGGAAAATCATCATCTGCTGCTGGCTTGACTGCAACCGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCAGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCAATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCTGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCCCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTATATGTTATGATTGACGACCCAGACGATCAGACAGACTACCACATAGCTCATCATATTGTGAGAGTTCATCAAAAGCGTGAAGGTGCTCTTGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTATATAGCTTATGCAAAAACTCTTAAACCAAAGCTCTCGCCCGATGCCAGAAAACTATTGGTAGACTCTTATGTTGCTCTCCGTAGAGGTGATACAAATCCTGGGAGTAGGGTTGCATACCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGACTGTCAGAGGCCATTGCACGGTGTCATTTGGACAATGAGGTACAACCTCGTCATGTTCGTCTAGCAGTAAAACTGCTGAAAACTTCCATAATAAGTGTGGAATCCAGTGAGATTGATCTGTCTGAGTTTCAAGAACAAAACCACAATGATGGTGCAGGTGGTGGCAATGAAAATGATAATAATAGAGATGCTAATTATCAAGAGGGGAATGATACAGCGCAGCAAGCTGCCGGAAATGGTAATGATCAAGTGGGAAACGATGCAGCTCAGCAAGCCACTGGAAATAATGATGGATCTAAACCCCAAGTGAGAAAACTCATTATGAGTGATGAATATTATCAGAGAGTTACCAGCGCCCTTATTATGCGTCTAAGACAGCATGAAGAGGCTGTTGTGCAAGGAGACGGTTTGTCTGGGATGAGGCAAAAAGATTTGATTCAATGGTACGTAGACCAACAAAATGAGAGAAACAACTACAGTTCGATGGATGAGGTGCAAGCTGAAATTTCCAAAATTAAAGCTATTATAGAGAGCTTAATTCGGAGAGAGGGCCATTTGATAGTTGTAGATAATGGGGAAGCCGCGGCAGCAGCAGCAGAACCCCCAGGCGCACCAAGAAATTACCGAATTTTAGCCGTGGCTCCTAATTATGTCATTGATTGA 2535 0.4406 MEAYGGFMVDEKAVRVENAFLDFLKSFKSSSQRNELYYEAEIELMKSNESNSMFIDFDHVIRFSDLLQQTISDEYLRFEPYLKNACKRFVMDLKPSLVSDDSPDKDINIAFYNMPIVKRLRELGTSEIGRLVSVTGVVTRTSEVRPELLHGTFKCLECGGVIKNVEQQFKYTEPTICANATCSNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDIILRHEIVEHARAGDTVIFTGTVVVIPDIMALASPGERSECRRDASQRKGSTAGNEGVSGLKALGVRDLNYRLAFIANSAQICDGRREIDIRNRKKDADEDNQQFTDQELEEIKRMRSTPDFFTKLVESIAPTVFGHPDIKRAILLMLLGGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREGALAPAFTTAELKRYIAYAKTLKPKLSPDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNEVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEQNHNDGAGGGNENDNNRDANYQEGNDTAQQAAGNGNDQVGNDAAQQATGNNDGSKPQVRKLIMSDEYYQRVTSALIMRLRQHEEAVVQGDGLSGMRQKDLIQWYVDQQNERNNYSSMDEVQAEISKIKAIIESLIRREGHLIVVDNGEAAAAAAEPPGAPRNYRILAVAPNYVID* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1273 844 Gene3D - 726 844 - -
Gso15g1273 844 Gene3D - 147 198 - -
Gso15g1273 844 SMART mcm 116 655 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 385 400 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 445 459 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 473 486 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 497 509 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein family signature 524 532 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 9 797 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 MobiDBLite consensus disorder prediction 258 277 - -
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 75 87 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 117 129 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 167 184 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 220 231 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Gso15g1273 844 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 279 300 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Gso15g1273 844 Pfam MCM OB domain 120 248 IPR033762 -
Gso15g1273 844 Pfam MCM P-loop domain 332 554 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 Gene3D - 8 116 - -
Gso15g1273 844 Pfam MCM AAA-lid domain 569 654 IPR041562 -
Gso15g1273 844 Pfam MCM6 C-terminal winged-helix domain 729 843 IPR041024 -
Gso15g1273 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 655 IPR027417 -
Gso15g1273 844 SUPERFAMILY Nucleic acid-binding proteins 20 250 IPR012340 -
Gso15g1273 844 CDD MCM6 347 653 - -
Gso15g1273 844 MobiDBLite consensus disorder prediction 670 726 - -
Gso15g1273 844 ProSiteProfiles MCM family domain profile. 344 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g1273 844 Coils Coil 786 806 - -
Gso15g1273 844 Gene3D - 120 248 IPR012340 -
Gso15g1273 844 Pfam MCM N-terminal domain 18 113 IPR027925 -
Gso15g1273 844 Gene3D - 322 659 IPR027417 -
Gso15g1273 844 ProSitePatterns MCM family signature. 453 461 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gso15g1273 844 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 9 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1273 Gso-Chr15 12977169 12983611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1273 1 844 Core DNA Replication Machinery Family AT5G44635 71.119 0.0 1273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1273 K02542 - gmx:100787290 1633.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1273 15 12977169 12983611 Gso9g0407 9 4013017 4019294 GST