Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1269 ATGTTTGGTCAGAGCATGGATTCTGCAAGGAATGCGGGTGGTGTGGCAGGGACAGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACAAGGTGGTTGGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACTGTGTTTCAAGTGATTTATAACTTGCCACCCGGGTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGCCATGATGAACATCAACCTTATGTACCTGGAGATTATGGGATAGTCAACACTGTCTTCTTGGCCACTGATCCTAACTACATACCTGTTTTACCCCCAGACGTTGCTTCTGGAAATAGCATGGATGTGGATAATGATGCTTTTCGACGAATGCAGGTCCGTCTGACCGATGGAACACTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAGATCTCCCGTCAGCGTATTTCTGCATTTCTATCTTCACACACCGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCCGTGAAACAGGCATTTCATATATTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAAGGGCAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGATCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCTTGGAAAGAAGGAAAGTCGTACTTAAATAGACAGAACAATGGACATGGAACTATGTTTTCAAGACGATTTATCCATGCAGGACCATATGATAATCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGCTTCATTTCCACAGTTACTACATCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCCCTGCCTGTACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCAGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCGTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCAATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCAAAGAACAGAGCATATGCACATATTAATCTTGATGAAATGACAGTTCATCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATCCTCTGCATAAAGTGATGGAACGCTTGGCAAATCCAGGTGTCAGGCGGCTTGTCATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGGGACATATTCAAGTTCTTCATTGGTGATTAG 1479 0.4314 MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLATDPNYIPVLPPDVASGNSMDVDNDAFRRMQVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLRDIFKFFIGD* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1269 492 SUPERFAMILY CBS-domain pair 357 491 IPR046342 -
Gso15g1269 492 SMART cbs_1 359 407 IPR000644 -
Gso15g1269 492 SMART cbs_1 441 490 IPR000644 -
Gso15g1269 492 SMART cbs_1 177 226 IPR000644 -
Gso15g1269 492 CDD E_set_AMPKbeta_like_N 22 100 - -
Gso15g1269 492 ProSiteProfiles CBS domain profile. 437 492 IPR000644 -
Gso15g1269 492 Gene3D Immunoglobulins 21 108 IPR013783 -
Gso15g1269 492 ProSiteProfiles CBS domain profile. 355 418 IPR000644 -
Gso15g1269 492 Pfam CBS domain 444 489 IPR000644 -
Gso15g1269 492 Pfam CBS domain 358 403 IPR000644 -
Gso15g1269 492 Gene3D - 331 490 IPR046342 -
Gso15g1269 492 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 491 - -
Gso15g1269 492 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
Gso15g1269 492 Gene3D - 148 330 IPR046342 -
Gso15g1269 492 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 491 - -
Gso15g1269 492 SUPERFAMILY CBS-domain pair 158 328 IPR046342 -
Gso15g1269 492 SUPERFAMILY E set domains 21 102 IPR014756 -
Gso15g1269 492 ProSiteProfiles CBS domain profile. 171 233 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1269 Gso-Chr15 12929386 12941849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1269 - - gmx:100785692 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1269 15 12929386 12941849 Gso9g0404 9 3966157 3975684 GST
Gso7g2111 7 44964423 44973017 Gso15g1269 15 12929386 12941849 PCT
Gso17g0193 17 1806720 1815145 Gso15g1269 15 12929386 12941849 PCT
Gso15g1269 15 12929386 12941849 Gso7g2111 7 44964423 44973017 PCT
Gso15g1269 15 12929386 12941849 Gso17g0193 17 1806720 1815145 PCT