Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1265 ATGGAAGATATTGGAGGCAGTTCCTCAAACGACAACAACAACAATGGTGGCATCATCAAGGAACAGGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCGGATTCTTCCTCAGAACGCCAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAATGTGTGTCGGAGTTCATAAGCTTCGTGACGAGTGAGGCTTCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACAGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACACTAGGCTTTGATAACTATGCTGAACCAATGAGAAGGTACTTGCATAGATATAGAGAGGTTGAGGTAGATCATAATAAGGTCAATCTTCAAGAAAAAGGGAATAGTCCTGAAGAGAAGGACGATGAATTATTTAAATTGAGCAATAGAGGGGTTGGGCTTTGA 435 0.4552 MEDIGGSSSNDNNNNGGIIKEQDRLLPIANVGRLMKRILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDNYAEPMRRYLHRYREVEVDHNKVNLQEKGNSPEEKDDELFKLSNRGVGL* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1265 144 SUPERFAMILY Histone-fold 22 129 IPR009072 GO:0046982
Gso15g1265 144 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Gso15g1265 144 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Gso15g1265 144 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Gso15g1265 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 2 132 - -
Gso15g1265 144 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso15g1265 144 Gene3D Histone, subunit A 17 140 IPR009072 GO:0046982
Gso15g1265 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Gso15g1265 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1265 Gso-Chr15 12838390 12839067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1265 3 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 59.722 3.83e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso15g1265 CBFD_NFYB_HMF 9.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1265 K08065 - gmx:100794513 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1265 15 12838390 12839067 Gso9g0400 9 3889254 3891079 GST
Gso7g2106 7 44921483 44922485 Gso15g1265 15 12838390 12839067 PCT
Gso17g0197 17 1850307 1851514 Gso15g1265 15 12838390 12839067 PCT
Gso15g1265 15 12838390 12839067 Gso7g2106 7 44921483 44922485 PCT
Gso15g1265 15 12838390 12839067 Gso17g0197 17 1850307 1851514 PCT