LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g1253	ATGTTGTATTTTTTTGTCTATTGCTTATTTCGTTGCGTGTTGTTTTTACTTCGTTGTGTGTTGTTTTTCTCTAAGATGTTATGGAAATTGAATATGGCATATTTTTTTGTATTTTGTTTATTTTGTTTTGTGTTGTTTTTCTTTGCCTGTTGGTTACTTCAAAAGCTTAGTGATCGTGTAGTTGAAAAACCCGTGTCTGAGGACAACAAAGCTCCTCAAACAAAGTATGATGTTTTTGTTAGTTTCAGGGGCAAGGACGTTCGTGGCACGTTTCTTAGCCATTTGATTGAAATTTTCAAAAGGAACAAAATAAATGCCTTTGTGGATGATAAACTTAAGCCGGGAGATGAAATATGGTCATCACTTGTTGAAGCAATTGAACAATCATTCATTTTGCTGATCATATTCTCCCAAAGCTATGCTTCTTCCCCTTGGTGTTTAGAAGAACTTGAGGCAATACTTGAATGCAATAAGAAATATGGACGGATTGTAATTCCAGTTTTCTACCATGTGGAGCCTGCAGATGTACGACATCAAAGAGGGACTTACAAAAATGCATTTAAGAAGCATCAAAAAAGAAACAAGAATAAGGTGCAAATCTGGAGACATGCTTTAAAAGAATCTGCTAACATCTCAGGAATTGAGACATCAAAGATTCGAAACGAGGTTGAGTTGCTTCAAGAAATTGTAAGGCTTGTGCTGGAAAGGTTGGGTAAATCTCCGATTAACTCAAAAATACTTATTGGAATTGATGAAAAAATTGCATATGTAGAATTATTGATACGCAAAGAGCCAGAAGCCACTTGTCTTATTGGAATTTGGGGCATGGCTGGTAATGGCAAGACAACCCTTGCAGAAGAAGTATTTAAGAAACTACAATCTGAATATGATGGTTGTTATTTTCTACCCAACGAAAGAGAACAATCAAGTAGACATGGAATAGATTCTTTGAAGAAAGAAATTTTTTCTGGACTTTTAGAAAATGTTGTGACAATAGACAATCCAAATGTGTCTCTTGATATTGATAGAAGAATTGGTCGTATGAAAGTTCTTATTGTTCTCGATGATGTTAATGATCCAGATCACCTAGAAAAATTACTGGGAACTCCTGATAATTTTGGATCAGGTAGTAGAATAATTATAACAACCAGATACGTGCAAGTACTTAACGCTAACAAAGCTAATGAGATATACCAGCTTGGAGAGTTCAGTTTAGATAAAGCCCTTGAACTTTTCAATTTGATTGCCTTTAAGCAAAGTGATCATCAATGGGAGTACAATGAACTATCAAAAAAGGTGGTCGATTATGCCAAAGGCAATCCATTAGTTCTTAAAGTCTTGGCTCAACTTCTTTGTGGAAAAAATAAGGAAGAATGGGAAGGTATGCTAGACACACTTAAAAGAATGCCTCCTGCAGATGCTTATAAAGTAATGAAACTGAGTTACGATGAACTAGATCGCAAAGAGCAACAGATTTTTCTAGATTTGGCATGTTTCTTTCTTAGAACGCATACAACGGTAAATGTGAGCAATCTAAAATCTTTACTGAAAGGCAATGAAAGCCAGGAAACAGTGACTTTTAGGTTAGGAAGGTTGAAAGACAAAGCTCTTATAACTTATTCCGACGATAATGTTATAGCTATGCATGATAGTTTACAAGAAATGGCTTTGGAGATTGTTCGTCGAGAGTCTAGTGAAGACCCTGGAAGCCGCAGTCGGTTGTGGGATCCAAATGACATTTTTGAGGCATTGAAAAATGTCAAGAGTACTAAGGCCATTAGAAGCATATTGATTCACTTGCCAACATTCATGAAGCAAGAGTTAGACCCTCACATATTTGGAAAGATGAACAGACTACAATTTCTGGAAATTTCTGGGAAATGTGAAAAAGATATCTTTGATGAACATAATATTCTTGCAAAATGGCTTCAATTTTCGGCAAATGAACTCAGATTTCTTTGTTGGTATCGTTACCCTCTAAAATCCTTGCCAGAGGATTTTTCTGCTGAAAAACTTGTTATATTGAAATTGCCAAAGGGCGAAATAAAATACCTTTGGCATGGAGTGAAGAATCTGATGAATTTAAAAGAACTTCACCTCACTGACTCCAAGATGTTAGAGGAGCTGCCAGATTTATCGAATGCCACAAATCTTGAAGTACTGGTTCTCCAGGGTTGTTCTATGTTAACTAGGGTGCACCCATCTATTTTCTCTCTGGGAAAACTTGAGAAATTGAACCTTCAAGACTGCACGTCCCTCACCACACTCGCAAGCAATTCCCATTTATGCAGCCTGAGTTATCTCAACCTTGATAAATGTGAGAAACTTAGGAAACTCTCACTGATAGCAGAGAATATTAAAGAACTGAGATTAAGATGGACGAAAGTCAAAGCATTTTCATTTACATTTGGACATGAAAGCAAGCTTCAATTGCTACTTCTCGAAGGAAGTGTCATCAAGAAACTACCTTCATATATAAAGGATCTAATGCAACTGTCACATCTAAATGTTAGCTATTGCTCGAATCTCCAGGAAATACCAAAGCTTCCCCCATCCCTTAAAATTCTAGATGCCAGATATTGCTCTTCACTTCAGGCTCTAGAGGAGCTTCCCCCATCCCTTAAAATTCTAGATACCAGATATTGCTCTTCACTTCAGACTCTAGAGGAGCTTCCTTCTTCCCTTAAAATTCTAAAAGTGGGATACTGCAAATCACTTCAGACACTACAAATGCTTCCCCGTTTCCTTAAATCTCTAACAGCCCAAGACTGCACATCATTGAAGACTGTAGTGTTTCCTTCAACTGCTACTGAACAACTAAAGGAGTACAGGAAAGAGGTTCTGTTCTGGAATTGCTTGAAGTTGAATCAACAATCTCTTGAGGCCATTGCATTGAATGCACAGATCAATGTGATGAAATTTGCAAACCGACGCCTCTCTGTATCAAATCACGATGATGTTGAAAATTACAATGATTATGATAAAAAATATCATTTTTATCAAGTTGTTTACGTGTATCCAGGAAGTAGTGTTCTAGAGTGGTTGGAGTATAAGACAAGAAATAATTATATAATTATTGATATGTCTTCAGCTCCACCTTCTCTCCCAGTGGGCTTCATTTTCTGCTTCGCCCTTGGTATGTATGGAGACACATCCCTGGAAAGAATTGAAGCTAACATTACTATAAGTGATCGTGAGGGTGAAGGTAAGAAGGACAGTGTTGGAATGTACATAGGTCTTCGGAATGGCACAATTGAATCAGATCACCTATGTGTGATGTACGACCAAAGATGTTCTGCCTTCCTATATAGCAGAGCCAAAAATCAAAAAGAGTTTAAAATCGAGGTTTCAATGGTGTTACGATCCTCATCCAAAGAAATTTTGACACTGCCGCAGCAGATGTTTAAAGGATTCGGGATCAGCCTAATAGACACCTTGGGATTTAGCAGTTTCAAACAACAAATGGAATTGCATGACTCGCTCCATGTTTAA	3492	0.372	MLYFFVYCLFRCVLFLLRCVLFFSKMLWKLNMAYFFVFCLFCFVLFFFACWLLQKLSDRVVEKPVSEDNKAPQTKYDVFVSFRGKDVRGTFLSHLIEIFKRNKINAFVDDKLKPGDEIWSSLVEAIEQSFILLIIFSQSYASSPWCLEELEAILECNKKYGRIVIPVFYHVEPADVRHQRGTYKNAFKKHQKRNKNKVQIWRHALKESANISGIETSKIRNEVELLQEIVRLVLERLGKSPINSKILIGIDEKIAYVELLIRKEPEATCLIGIWGMAGNGKTTLAEEVFKKLQSEYDGCYFLPNEREQSSRHGIDSLKKEIFSGLLENVVTIDNPNVSLDIDRRIGRMKVLIVLDDVNDPDHLEKLLGTPDNFGSGSRIIITTRYVQVLNANKANEIYQLGEFSLDKALELFNLIAFKQSDHQWEYNELSKKVVDYAKGNPLVLKVLAQLLCGKNKEEWEGMLDTLKRMPPADAYKVMKLSYDELDRKEQQIFLDLACFFLRTHTTVNVSNLKSLLKGNESQETVTFRLGRLKDKALITYSDDNVIAMHDSLQEMALEIVRRESSEDPGSRSRLWDPNDIFEALKNVKSTKAIRSILIHLPTFMKQELDPHIFGKMNRLQFLEISGKCEKDIFDEHNILAKWLQFSANELRFLCWYRYPLKSLPEDFSAEKLVILKLPKGEIKYLWHGVKNLMNLKELHLTDSKMLEELPDLSNATNLEVLVLQGCSMLTRVHPSIFSLGKLEKLNLQDCTSLTTLASNSHLCSLSYLNLDKCEKLRKLSLIAENIKELRLRWTKVKAFSFTFGHESKLQLLLLEGSVIKKLPSYIKDLMQLSHLNVSYCSNLQEIPKLPPSLKILDARYCSSLQALEELPPSLKILDTRYCSSLQTLEELPSSLKILKVGYCKSLQTLQMLPRFLKSLTAQDCTSLKTVVFPSTATEQLKEYRKEVLFWNCLKLNQQSLEAIALNAQINVMKFANRRLSVSNHDDVENYNDYDKKYHFYQVVYVYPGSSVLEWLEYKTRNNYIIIDMSSAPPSLPVGFIFCFALGMYGDTSLERIEANITISDREGEGKKDSVGMYIGLRNGTIESDHLCVMYDQRCSAFLYSRAKNQKEFKIEVSMVLRSSSKEILTLPQQMFKGFGISLIDTLGFSSFKQQMELHDSLHV*	1164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g1253	1163	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	239	496	IPR027417	-
	Gso15g1253	1163	SUPERFAMILY	L domain-like	599	937	-	-
	Gso15g1253	1163	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	71	1160	-	-
	Gso15g1253	1163	Pfam	NB-ARC domain	259	471	IPR002182	GO:0043531
	Gso15g1253	1163	Gene3D	-	403	486	IPR042197	-
	Gso15g1253	1163	Pfam	TIR domain	75	241	IPR000157	GO:0007165
	Gso15g1253	1163	SMART	till_3	75	211	IPR000157	GO:0007165
	Gso15g1253	1163	PRINTS	Disease resistance protein signature	270	285	-	-
	Gso15g1253	1163	PRINTS	Disease resistance protein signature	344	358	-	-
	Gso15g1253	1163	PRINTS	Disease resistance protein signature	437	451	-	-
	Gso15g1253	1163	PRINTS	Disease resistance protein signature	737	753	-	-
	Gso15g1253	1163	Gene3D	Ribonuclease Inhibitor	578	784	IPR032675	-
	Gso15g1253	1163	Gene3D	-	73	235	IPR035897	-
	Gso15g1253	1163	ProSiteProfiles	TIR domain profile.	74	237	IPR000157	GO:0007165
	Gso15g1253	1163	Gene3D	-	236	397	IPR027417	-
	Gso15g1253	1163	SUPERFAMILY	Toll/Interleukin receptor TIR domain	67	213	IPR035897	-
	Gso15g1253	1163	Gene3D	Ribonuclease Inhibitor	785	980	IPR032675	-
	Gso15g1253	1163	SUPERFAMILY	"Winged helix" DNA-binding domain	475	585	IPR036390	-
	Gso15g1253	1163	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	71	1160	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g1253	Gso-Chr15	12705790	12712781	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g1253	76	877	WRKY Transcription Factor Family	AT4G12020	32.803	5.13e-96	336

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g1253	-		-	gmx:100791891	2269.97