LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso15g1252	ATGTTGTATTTTTTTGTCTCTTGCTTATTTCGTTGTGTGTTGTTTTTCTCTAAGATATTCTGGAAATTCAGTGTGTTGTTGTATTTTCTTGTCTCCTGTTTACTTCGTTGTGTGTTGTTTTTCTCTAAGATGTTATGGAAATTGAATATGGCATATTTTTTTGTCTTTTGTTTATTGTGTTTTGGGTTGTTTTTCTTTGTCTGTTGGTTACTTCAAAAGCTTAGTGATCCTGTAGTTGAAAAACCCGTGTCTGAGGACAACAAAGCTCCTCAAACAAAGTATGATGTTTTTGTTAGTTTCAGGGGCAAGGACGTTCGTGGCAACTTTCTTAGCCATTTGGATGAAATTTTCAAAAGGAACAAAATATATGCCTTTGTGGATGATAAACTTAAGAAGGGAGATGAAATATGGTCATCACTTGTTGAAGCAATTGAACAATCATTCATTTTGCTGATCATATTCTCCCAAAGCTATGCTTCTTCCCGTTGGTGTTTAAAAGAACTTGAGGCAATACTTGAATGCAATAAGAAATATGGACGGATTGTAATTCCAGTTTTCTACCATGTGGAGCCTGCAGATGTACGACATCAAAGAGGGAGTTACAAAAATGCATTTAAGAAGCATGAAAAAAGAAACAAGACTAAGGTGCAAATCTGGAGACATGCTTTAAAAAAATCTGCTAACATTGTAGGAATTGAGACATCAAAGATTCGAAACGAGGTTGAGTTGCTTCAAGAAATTGTAAGGCTTGTGCTGAAAAGGTTGGGTAAATCTCCGATTAACTCAAAAATACTTATTGGAATTGATGAAAAAATTGCATATGTAGAATCATTGATACGCAAAGAGCCAAAAGTCACTTGTCTTATTGGAATTTGGGGCATGGCCGGTAATGGCAAGACAACCCTTGCAGAAGAAGTATTTAAGAAACTACAATCTGAATATGATGGTTGTTATTTTCTAGCCAATGAAAGAGAACAATCAAGTAGACATGGAATAGATTCTTTGAAGAAAGAAATTTTTTCTGGACTTTTAGAAAATGTTGTGACAATAGACGATCCAAATGTGTCTCTTATTGATATTGATAGAAGAATTGGTCGTATGAAAGTTCTTATTGTTCTCGATGATGTTAATGATCCAGATCACCTAGAAAAATTACTGGGAACTCCTGATAATTTTGGATCAGGTAGTAGAATAATTATAACAACCAGATATGTGCAAGTACTTAACGCTAACAAAGCTAATGAGATATACCAGCTTGGAGAGTTCAGTTTAGATAAAGCCCTTGAACTTTTCAATTTGATTGCCTTTAAGCAAAGTGATCATCAATGGGAGTACAATGAACTATCAAAAAAGGTGGTCGATTATGCCAAAGGCAATCCATTAGTTCTTAAAGTCTTGGCTCAACTTCTTTGTGGAAAAGATAAGGAAGAATGGGAAGGTATGCTAGACTCACTTAAAAGAATGCCTCCTGCAGATGTTTATAAAGTAATGAAACTGAGTTACGATGTACTAGATCGCAAAGAGCAACAGATTTTTCTAGATTTGGCATGTTTCTTTCTTAGAACGAATACAATGGTAAATGTGAGCAATCTAAAATCTTTACTGAAAGGCAATGAAAGCCAGGAAACAGTGACTTTTAGGTTAGGAAGGTTGAAAGACCAAGCTCTTATAACTTATTCCGATGATAATGTTATAGCTATGCATGATAGTTTACAAGAAATGGCTATGGAGATTGTTCGTCGAGAGTCTAGTGAAGACCCTGGAAGCCGCAGTCGGTTGTGGGATCCAAATGACATTTTTGAGGCATCAAAAAATGACAAGAGTACTAAGGCCATTAGAAGCATATTGATTCACTTGCCAACATTCATGAAGCAAGAGTTAGGCCCTCACATATTTGGAAAGATGAACAGACTACAATTTCTGGAAATTTCTGGGAAATGTGAAGAAGATAGCTTTGATGAACAAAATATTCTTGCAAAATGGCTTCAATTTTCGGCAAATGAACTCAGATTTCTTTGTTGGTATCATTACCCTCTAAAATCCTTGCCAGAGAATTTTTCTGCTGAAAAACTTGTCATCTTGAAATTGCCAAAGGGCGAAATAAAATACCTTTGGCATGGAGTGAAGAATCTGGTGAATTTAAAAGAACTTCACCTCACTGACTCCAAGATGTTAGAGGAGCTGCCAGATTTATCGAATGCCACAAATCTTGAAGTACTGGTTCTCGAGGGTTGTTCTATGTTAACTACGGTGCATCCATCTATTTTCTCTCTGGGAAAACTTGAGAAATTGAACCTTCAAGACTGCACGTCCCTCACCACACTCGCAAGCAATTCCCATTTATGCAGCCTGAGTTATCTCAACCTTGATAAATGTGAGAAACTTAGGAAACTCTCACTGATAACAGAGAATATTAAAGAACTGAGATTAAGATGGACGAAAGTCAAAGCATTTTCATTTACATTTGGAGATGAAAGCAAGCTTCAATTGCTACTTCTCGAAGGAAGTGTCATTAAGAAACTACCTTCATCTATAAAGGATCTAATGCAACTGTCACATCTAAATGTTAGCTATTGCTCGAAGCTCCAGGAAATACCAAAGCTTCCCCCATCCCTTAAAATTCTAGATGCCAGATATTGCTCTTCACTTCAGACTCTAGAGGAGCTTCCTTCTTCCCTTAAAATTCTAAAAGTGGGAAACTGCAAATCACTTCAGATACTACAAAAGCCTCCCCGTTTCCTCAAATCTCTAATAGCCCAAGACTGCACATCATTGAAGACTGTAGTGTTTCCTTCAACGGCTACTGAACAACTAAAGGAAAACAGGAAAGAGGTTCTGTTCTGGAATTGCTTGAAGTTGAATCAACAATCTCTTGAGGCCATTGCATTGAATGCGCAGATCAATGTGATCAAATTTGCAAACCGATGCCTCTCTGCACCAAATCACGATGACGTTGAAAATTACAATGATTATGATAAAAAATATCATTTTTATCAAGTTGTTTACGTGTATCCAGGAAGTAGTGTTCTAGAGTGGTTGGAGTATAAGACAAGAAATAATTATATAATTATTGATATGTCTTCAGCTCCACCTTCTCTCCCAGTGGGCTTCATTTTCTGCTTCGCCCTTGGTATGTATGGAGACACATCCCTGGAAAGAATTGAAGCTAACATTACTATAAGTGATCGTGAGGGTGAAGGTAAGAAGGACAGTGTTGGAATGTACATAGGTCTTCGGAATGGCACAATTGAATCAGATCACCTATGTGTGATGTACGACCAAAGATGTTCTGCCTTCCTATATAGCAGAGCCAAAAATCAAAAAGAGTTTAAAATCGAGGTTTCAATGGTGTTACGATCCTCATCCAAAGAAATTTTGACACTGCCGCAGCAGATGTTTAAAGGATTCGGGATCAGCCTAATAGACACCTTGGGATTTAGCAGTTTCAAACAACAAATGGAATTGCATGACTCGCTCCATGTTTAA	3486	0.3698	MLYFFVSCLFRCVLFFSKIFWKFSVLLYFLVSCLLRCVLFFSKMLWKLNMAYFFVFCLLCFGLFFFVCWLLQKLSDPVVEKPVSEDNKAPQTKYDVFVSFRGKDVRGNFLSHLDEIFKRNKIYAFVDDKLKKGDEIWSSLVEAIEQSFILLIIFSQSYASSRWCLKELEAILECNKKYGRIVIPVFYHVEPADVRHQRGSYKNAFKKHEKRNKTKVQIWRHALKKSANIVGIETSKIRNEVELLQEIVRLVLKRLGKSPINSKILIGIDEKIAYVESLIRKEPKVTCLIGIWGMAGNGKTTLAEEVFKKLQSEYDGCYFLANEREQSSRHGIDSLKKEIFSGLLENVVTIDDPNVSLIDIDRRIGRMKVLIVLDDVNDPDHLEKLLGTPDNFGSGSRIIITTRYVQVLNANKANEIYQLGEFSLDKALELFNLIAFKQSDHQWEYNELSKKVVDYAKGNPLVLKVLAQLLCGKDKEEWEGMLDSLKRMPPADVYKVMKLSYDVLDRKEQQIFLDLACFFLRTNTMVNVSNLKSLLKGNESQETVTFRLGRLKDQALITYSDDNVIAMHDSLQEMAMEIVRRESSEDPGSRSRLWDPNDIFEASKNDKSTKAIRSILIHLPTFMKQELGPHIFGKMNRLQFLEISGKCEEDSFDEQNILAKWLQFSANELRFLCWYHYPLKSLPENFSAEKLVILKLPKGEIKYLWHGVKNLVNLKELHLTDSKMLEELPDLSNATNLEVLVLEGCSMLTTVHPSIFSLGKLEKLNLQDCTSLTTLASNSHLCSLSYLNLDKCEKLRKLSLITENIKELRLRWTKVKAFSFTFGDESKLQLLLLEGSVIKKLPSSIKDLMQLSHLNVSYCSKLQEIPKLPPSLKILDARYCSSLQTLEELPSSLKILKVGNCKSLQILQKPPRFLKSLIAQDCTSLKTVVFPSTATEQLKENRKEVLFWNCLKLNQQSLEAIALNAQINVIKFANRCLSAPNHDDVENYNDYDKKYHFYQVVYVYPGSSVLEWLEYKTRNNYIIIDMSSAPPSLPVGFIFCFALGMYGDTSLERIEANITISDREGEGKKDSVGMYIGLRNGTIESDHLCVMYDQRCSAFLYSRAKNQKEFKIEVSMVLRSSSKEILTLPQQMFKGFGISLIDTLGFSSFKQQMELHDSLHV*	1162

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso15g1252	1161	Pfam	TIR domain	93	259	IPR000157	GO:0007165
	Gso15g1252	1161	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	254	515	IPR027417	-
	Gso15g1252	1161	Gene3D	-	91	252	IPR035897	-
	Gso15g1252	1161	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	89	1158	-	-
	Gso15g1252	1161	Gene3D	Ribonuclease Inhibitor	617	799	IPR032675	-
	Gso15g1252	1161	SUPERFAMILY	"Winged helix" DNA-binding domain	492	601	IPR036390	-
	Gso15g1252	1161	SUPERFAMILY	L domain-like	619	954	-	-
	Gso15g1252	1161	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	89	1158	IPR044974	GO:0006952
	Gso15g1252	1161	SUPERFAMILY	Toll/Interleukin receptor TIR domain	85	231	IPR035897	-
	Gso15g1252	1161	Gene3D	Ribonuclease Inhibitor	800	930	IPR032675	-
	Gso15g1252	1161	SMART	till_3	93	229	IPR000157	GO:0007165
	Gso15g1252	1161	Gene3D	-	422	505	IPR042197	-
	Gso15g1252	1161	PRINTS	Disease resistance protein signature	288	303	-	-
	Gso15g1252	1161	PRINTS	Disease resistance protein signature	363	377	-	-
	Gso15g1252	1161	PRINTS	Disease resistance protein signature	456	470	-	-
	Gso15g1252	1161	PRINTS	Disease resistance protein signature	756	772	-	-
	Gso15g1252	1161	Gene3D	-	253	416	IPR027417	-
	Gso15g1252	1161	Pfam	NB-ARC domain	276	501	IPR002182	GO:0043531
	Gso15g1252	1161	ProSiteProfiles	TIR domain profile.	92	255	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso15g1252	Gso-Chr15	12696797	12704584	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso15g1252	94	896	WRKY Transcription Factor Family	AT4G12020	33.415	1.51e-100	349

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso15g1252	-		-	gmx:112999556	2293.46