Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1250 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTGAAGCGTGGCCGCAACCTCGCCGCGCAGGAACTGTGGTCCGAGCTTGACCCTTTCTCTGACCTCCTTGGCTTCGACACCACCACCACCACCACCACCAACCAACCACCCCTTCCAGACAAAAAAGTGGTGTCATCATGTGAGAAGAAGAAGAAGAAAAGTGTGAGTGCAGAAAAGAAGAGTGGTGGGCGAGCTCGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCGTGGGGCAAGTGGGCCGCGGAAATAAGGGACCCACATAAGGGCGTCCGCGTCTGGCTCGGCACCTTCCCCACCGCCGAGGAAGCCGCCCGAGCCTACGACGACGCCGCCAAGCGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGCCACCGCTCCGCCACCCTCCAAAAAACAACGCTGCCTCAGCCCTGACACCACCACCGAACAAAGCAGCAGCTCACAATCCACCACTGGATCCACCGGATCGCCGCCTTCCGCCGCCTTCCACGGCGGAGGAGATGAACTCGACCTGAAACAACTTGAACGGTTTCTAGGGTTGGACAACATGGGTGCTGAGTGGGACAACATGGATGACCTGTGGATGCTGGACGACGTCGTTGTGCCCAACCGTCACTTAATTTACTAG 675 0.5822 MCGGAIISDFIGVKRGRNLAAQELWSELDPFSDLLGFDTTTTTTTNQPPLPDKKVVSSCEKKKKKSVSAEKKSGGRARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDDAAKRIRGDKAKLNFPATAPPPSKKQRCLSPDTTTEQSSSSQSTTGSTGSPPSAAFHGGGDELDLKQLERFLGLDNMGAEWDNMDDLWMLDDVVVPNRHLIY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1250 224 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 MobiDBLite consensus disorder prediction 40 83 - -
Gso15g1250 224 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Gso15g1250 224 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 MobiDBLite consensus disorder prediction 149 174 - -
Gso15g1250 224 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Gso15g1250 224 PANTHER DNA-BINDING DOMAIN 1 159 IPR044808 GO:0003700|GO:0009873
Gso15g1250 224 MobiDBLite consensus disorder prediction 134 182 - -
Gso15g1250 224 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Gso15g1250 224 PANTHER EREBP TRANSCRIPTION FACTOR 1 159 - -
Gso15g1250 224 MobiDBLite consensus disorder prediction 55 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1250 Gso-Chr15 12656991 12659306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1250 1 216 AP2-EREBP Transcription Factor Family AT3G16770 46.183 3.10e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g1250 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1250 K09286 - gmx:100779626 384.415