Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1228 ATGTCTCCTTCCTTTTCACCTTCTTGGCTAACTTCTCCTTCATGTTCCACTTTGGACATAGATTCATCTTCTCCTACTGCTTTACTCATAGTTCAGTGGTTGAGGTTTATTTTTCTATCTCCATGTCCACAACGAGTGCTTCTTTCAGCTGTTGATTCAATCTTCTTGCTCTCACTCTTAGCCTTTGCAGCAGCTAAACTCTATTCTCGATTCACTTCCAACGCCACCTCCAACTCTACCATCACCAAACCCCTTCTGCAAGAGAAAGACTCTGACTACAAAGTCACCTTCTGGTTCAAACTACCCCTCTTGGTAACCACCCTTTTGGCCATAGCTTACACGGTTCTAAGCATCTTGGCCTTCACTCAAACGAGCCTTCCGTCATGGAAACTCATAGAAGCGCTTTTTCGGCTCTTCCAAGCGGTGTCCAACATAGTGGTGGCGATCCTAATGGTCCACGAGAAAAAGTTCAAAGCTTCTAAGCACCCTTTGTCACTGAGAATCTATTGGATTGCGAACTTGGTGGTTTCGTGCTTGTTTGCCACTTCGGCCATTGTTCGATTGATAACTGTCGATGTAGTGAAATTGGAGCTAAGTTTGAGAGTGGATGACATATTCTCGTTGGTTAATCTTCCACTGTCCGCCTTCCTTTTCCTAGTAGCAATGAAAGGATCAACGGGGATTCAAGTGATTAGAATTTCTGATGTAGTGACAACATATCAGTCCCTTTACACTGACAGAACTTTGAGCCCTTATGCCTATTCTTCGTTCTTCTCCAAAACAGTGTGGCTTTGGATGAACCCTTTGCTGAACAAAGGGTACAAAACATCCCTCAAGCTTGAAGATGTGCCTTCTCTTCCTATTGATTTCAGAGCAGAAAAGATGTCAGAGCTTTTCCATAGCAATTGGCCAAAGCCTGAGGAAAACAGCAAGCACCCGGTTGGACTCACCTTGTTGAGATGCTTCTGGAAACACATAGCATTCACTGGCTTCCTTGCAGTTATAAGGCTTGGAGTTATGTACATTGGTCCAATGCTTATTCAGAGTTTCGTTGATTTCACTTCAAGAAAAGACAGCACCCCCTATGAAGGCCTTGTTCTGATACTGATCCTGTATTTGGCAAAGTCAACTGAAGTCCTCTCTCTGCACCATTTCAATTTCCACTCTCAGAAGCTTGGCATGCTCATTCGTTCCAGCCTAATCACTTCTGTGTATAAGAAGGGTCTGAGATTGTCGAGCTCTTCAAGGCAGGCTCATGGTACTGGCCAGATTGTGAACCACATGTCTGTTGACGCGCAACAGCTCGCGGATTTGATGATGCAGTTTCACCCCATATGGCTGATGCCACTGCAAGTGACTGCAGCTCTGGTCCTTATTTACAGCAACATCGGGGTGTCTGCGTTCGCGGCGCTTCTTGGATCGAGTATTGTGTTTGTTTTCACTCTCATTCGGACAAAGAGAACCAACAGCTATCAGTTCATGATAATGAAGAGTCGTGACTTGAGAATGAAGGCAACTAATGAGTTGTTAAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAATACTTTGGCAACAAGATTGGCAAGTTTCGTGAAGCGGAGCACGGTTGGATTGGGAAATTCTTGTACTATTTTGCTGTTAACATGGGGGTTCTGGGCTCTGCTCCATTGTTGGTCACTGTTCTCACATTTGGAAGTGCTACTCTTCTAGGGGTTCCTCTGAATGCTGGCAGTGTGTTCACAATCACTTCAGTGATCAAGATTCTGCAGGAGCCGGTGAGGACCTTCCCTCAGGCTCTCATCGTGATTTCACAAGCGATGATTTCTCTCGGGAGGCTGAACGAGTTCTTGACGAGCAAGGAAATGGATGAGGGAGCAGTGGAGAGAGTGGAGGGCTGCGACGGTGACACGGCGGTGGAGATCAAGGACGGACAATTCTCCTGGGATGATGCAGATGGGAATGTGGCTCTGAGAGTTGAAGAGATGAAAATCAAGAAAGGGGACCATGCTGCTGTTGTGGGAACAGTTGGCTCAGGCAAGTCTTCTTTGTTGGCTTCTGTGTTGGGGGAAATGTTCAAGATATCAGGAAAGGTCAGAGTTTGTGGGTCAATAGCCTATGTAGCCCAGACATCATGGATTCAGAATGCAACCATCCAAGACAACATATTGTTTGGTTTACCAATGAACAGAGAGAAGTACAGGGAAGCAATAAGAGTGTGCTGCTTGGAAAAGGATCTTGAAATGATGGAACATGGAGACCAGACTGAGATTGGAGAAAGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTGTACAACTTGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTGCTCAGTGCTGTTGATGCCCAAACTGGATCATTTATTTTTAAGGAATGTATTATGGGAGCCCTAAAAAATAAGACCATTTTACTTGTAACCCATCAAGTTGACTTCTTGCATAACGTTGACTGCATAATGGTAATGCGAGAAGGGAAAATCGTGCAAAGTGGCAAGTATGATGAACTTCTCAAAGCAGGCTTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGGGATTGCAGAGTCTAGTGATACAGGTGGTGAAAATTCTGCTCAGTCTCCAAAACTGGCTCGCATCCCTTCAAAAGAAAAGGAAAACGCAGATGAAAAGCAACCTCAAGAACAATCCAAGTCAGATAAGGCTTCAGCAAAGCTCATTGAAGACGAGGAAAGGGAAACCGGCCGTGTAAACCTCAAAGTGTATAAACACTATTTCACTGAAGCATTTGGGTGGTGGGGTGTTGTACTGATGCTGGCAATGTCTCTTGCATGGATTTTATCCTTCTTGGCCAGTGACTACTGGCTAGCAATTGGAACTGCAGAAGATAGTGCCTTTCCTCCTTCTACATTCATCATTGTCTATGCTTGCATAGCAGGTCTTGTTTGTACTGTGGTGATGACCAGATCACTCTTATTTACATATTGGGGTCTAAAGACATCTCAAAGCTTTTTCAGTGGAATGCTTGAAAGCATCTTGCATGCACCAATGTCATTCTTTGACACCACTCCCTCTGGCAGAATTTTGAGTCGTGTATCTACTGATATACTTTGGGTTGATATATCAATTCCAATGTTAGTAAACTTCGTCATGATCACGTACTTTTCAGTAATCAGCATCCTCATTGTAACATGCCAAAATGCTTGGGAAACGGTCTTCCTCTTAATCCCTCTGTTCTGGCTGAATAACTGGTATCGGAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCACCACTTTTCAGAAACCATTGCTGGTGTTATGACCATCCGTGGCTTCAGAAAGCAGACCGCATTTTGTCAAGAAAATATTGACAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGTGCTAATGAATGGCTTTGTTTTCGCTTGGACTACATGGGAGTGGTTTTCCTTTGCATTGCCACTAGTTTTATGATCTTTCTGCCAAGTGCTATTATTAAGCCAGAATATGTTGGTTTGTCTTTGTCCTATGGCCTGGCTCTCAGTAGTCTCTTGGCATTTACCATAAGCATGACTTGTTCTGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCTCCATGGAAAATTGCTGATAAAACTCCACCTCAGAATTGGCCCAGTCAAGGCACTATTGTGTTAAGCAATTTGCAGGTTCGGTATCGGCCAAATACTCCTCTGGTTCTCAAGGGAATCTCTCTCACCATTGAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGAAGTGGGAAATCAACCCTCATTCAGGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAAAATAACTGTTGATGGAATCAACATTTGCACTGTGGGCCTTCATGATCTGAGGTCTAGATTTGGAATTATTCCTCAAGAGCCTGTCCTCTTTCAAGGAACAGTACGAAGCAATGTTGACCCCCTTGGACTGTATTCAGAAGAAGAAATTTGGAAGAGCCTTGAGCGCTGCCAACTGAAAGATGTGGTGGCTGCAAAGCCAGAGAAACTTGAGGCTCCAGTGGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTTCTTTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTGTTCATGGATGAGGCAACAGCATCCGTTGATTCACAAACTGATGCTGTAATACAAAAGATCATCCGTGAGGACTTCGCAGATCGTACAATTATAAGCATTGCTCACAGAATACCAACAGTTATGGACTGTGACAGAGTTTTAGTCATTGATGCAGGCTATGCAAAGGAATATGACAAACCATCACGGTTGTTAGAAAGGCCTTCACTTTTTGGAGCATTGGTTAAGGAGTACTCCAATAGATCAGCTTAA 4506 0.4419 MSPSFSPSWLTSPSCSTLDIDSSSPTALLIVQWLRFIFLSPCPQRVLLSAVDSIFLLSLLAFAAAKLYSRFTSNATSNSTITKPLLQEKDSDYKVTFWFKLPLLVTTLLAIAYTVLSILAFTQTSLPSWKLIEALFRLFQAVSNIVVAILMVHEKKFKASKHPLSLRIYWIANLVVSCLFATSAIVRLITVDVVKLELSLRVDDIFSLVNLPLSAFLFLVAMKGSTGIQVIRISDVVTTYQSLYTDRTLSPYAYSSFFSKTVWLWMNPLLNKGYKTSLKLEDVPSLPIDFRAEKMSELFHSNWPKPEENSKHPVGLTLLRCFWKHIAFTGFLAVIRLGVMYIGPMLIQSFVDFTSRKDSTPYEGLVLILILYLAKSTEVLSLHHFNFHSQKLGMLIRSSLITSVYKKGLRLSSSSRQAHGTGQIVNHMSVDAQQLADLMMQFHPIWLMPLQVTAALVLIYSNIGVSAFAALLGSSIVFVFTLIRTKRTNSYQFMIMKSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIGKFREAEHGWIGKFLYYFAVNMGVLGSAPLLVTVLTFGSATLLGVPLNAGSVFTITSVIKILQEPVRTFPQALIVISQAMISLGRLNEFLTSKEMDEGAVERVEGCDGDTAVEIKDGQFSWDDADGNVALRVEEMKIKKGDHAAVVGTVGSGKSSLLASVLGEMFKISGKVRVCGSIAYVAQTSWIQNATIQDNILFGLPMNREKYREAIRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDVLSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDCIMVMREGKIVQSGKYDELLKAGLDFGALVAAHESSMGIAESSDTGGENSAQSPKLARIPSKEKENADEKQPQEQSKSDKASAKLIEDEERETGRVNLKVYKHYFTEAFGWWGVVLMLAMSLAWILSFLASDYWLAIGTAEDSAFPPSTFIIVYACIAGLVCTVVMTRSLLFTYWGLKTSQSFFSGMLESILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLVNFVMITYFSVISILIVTCQNAWETVFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETIAGVMTIRGFRKQTAFCQENIDKVNASLRMDFHNNGANEWLCFRLDYMGVVFLCIATSFMIFLPSAIIKPEYVGLSLSYGLALSSLLAFTISMTCSVENKMVSVERIKQFTNLPSEAPWKIADKTPPQNWPSQGTIVLSNLQVRYRPNTPLVLKGISLTIEGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKITVDGINICTVGLHDLRSRFGIIPQEPVLFQGTVRSNVDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEAPVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQKIIREDFADRTIISIAHRIPTVMDCDRVLVIDAGYAKEYDKPSRLLERPSLFGALVKEYSNRSA* 1502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1228 1501 SUPERFAMILY ABC transporter transmembrane region 943 1241 IPR036640 GO:0005524|GO:0016021
Gso15g1228 1501 Gene3D ABC transporter type 1, transmembrane domain 316 617 IPR036640 GO:0005524|GO:0016021
Gso15g1228 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1251 1494 IPR027417 -
Gso15g1228 1501 SMART AAA_5 1287 1471 IPR003593 -
Gso15g1228 1501 SMART AAA_5 668 841 IPR003593 -
Gso15g1228 1501 CDD ABCC_MRP_domain2 1259 1479 - -
Gso15g1228 1501 Gene3D - 1244 1493 IPR027417 -
Gso15g1228 1501 MobiDBLite consensus disorder prediction 871 888 - -
Gso15g1228 1501 CDD ABCC_MRP_domain1 641 841 - -
Gso15g1228 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Gso15g1228 1501 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 62 1501 - -
Gso15g1228 1501 MobiDBLite consensus disorder prediction 871 918 - -
Gso15g1228 1501 Gene3D ABC transporter type 1, transmembrane domain 908 1242 IPR036640 GO:0005524|GO:0016021
Gso15g1228 1501 Gene3D - 618 883 IPR027417 -
Gso15g1228 1501 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Gso15g1228 1501 CDD ABC_6TM_ABCC_D2 942 1236 IPR044726 GO:0140359
Gso15g1228 1501 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524
Gso15g1228 1501 SUPERFAMILY ABC transporter transmembrane region 317 623 IPR036640 GO:0005524|GO:0016021
Gso15g1228 1501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 860 IPR027417 -
Gso15g1228 1501 Pfam ABC transporter transmembrane region 968 1186 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso15g1228 1501 Pfam ABC transporter transmembrane region 328 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso15g1228 1501 MobiDBLite consensus disorder prediction 890 918 - -
Gso15g1228 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 327 607 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso15g1228 1501 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso15g1228 1501 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 62 1501 - -
Gso15g1228 1501 Pfam ABC transporter 1278 1426 IPR003439 GO:0005524
Gso15g1228 1501 Pfam ABC transporter 663 791 IPR003439 GO:0005524
Gso15g1228 1501 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1261 1495 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1228 Gso-Chr15 12287036 12297054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1228 607 853 Calmodulin-binding Proteins AT2G36910 30.189 1.41e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1228 - K05665 gmx:100780167 2939.44