Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1219 ATGGGACAAGAATCAGATTACAAAACCCAGTTGGTGTTGGAGGTTTGCTCCATTTCCACACGTTCTGTTGTGTGTGTTCATAGACATGTCTCAAACCATCATGTTAAGCCACCTTTCATAGATTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAGCACCATTCGCAAGCAATACCATAAACTTGCCTTGCAACTTCATCCGGACAAGAATACACACCCGAAGGCTGAAATTGCATTCAAGCTTGTCTCTGAGGCTTGTATATGTCTGTCTGATGCTGCAAAAAGGAAAGCTTTTGACTTAAAGAGACACAAGAATTTCTGCTTTGAGTGCAATAGAATCCCTTATACATCCAAACGTGTCCCTAACAATTCCAATGGTTCAAGTTTCAAGACATGGAATATCATTTGGGACTCAAGATCTTACAAAGTTTGGAGAAATATTAGGAACATGAAAGATAGACTGAAGGAGGAGGCCAAGGTGATAGAGAACTGTCTTAGGAAAAATTCAATGGCAAAGAAAGAATCTCCCCTCTACAATCCAGATGACTATAGACATGGAAGCAGTTTCAAGCATAAAGTTGAGAGAGAAATCCCTGTTTTTAATCCATTAAAAAACTTGCACAAAGGGTACCCTCATTTGAGGGGCAATGTTTACAAGAATTCTGAGACATGTTGGTGGTACTTGCATACACAAAATCTTGTGCACAATGACAAGGGGGAAGCCAAGTATGCATCCCCGGTTTTTGAGGTCAGATCACAAAGGAGCATGCTCTCAACAAGTAAATTTGCTTATGTCCCATCATAA 813 0.4047 MGQESDYKTQLVLEVCSISTRSVVCVHRHVSNHHVKPPFIDWYCILGVEENAGVSTIRKQYHKLALQLHPDKNTHPKAEIAFKLVSEACICLSDAAKRKAFDLKRHKNFCFECNRIPYTSKRVPNNSNGSSFKTWNIIWDSRSYKVWRNIRNMKDRLKEEAKVIENCLRKNSMAKKESPLYNPDDYRHGSSFKHKVEREIPVFNPLKNLHKGYPHLRGNVYKNSETCWWYLHTQNLVHNDKGEAKYASPVFEVRSQRSMLSTSKFAYVPS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1219 270 SMART dnaj_3 40 97 IPR001623 -
Gso15g1219 270 SUPERFAMILY Chaperone J-domain 29 107 IPR036869 -
Gso15g1219 270 Coils Coil 150 170 - -
Gso15g1219 270 CDD DnaJ 41 88 IPR001623 -
Gso15g1219 270 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 263 - -
Gso15g1219 270 ProSiteProfiles dnaJ domain profile. 41 105 IPR001623 -
Gso15g1219 270 PANTHER BNAC03G44070D PROTEIN 4 263 - -
Gso15g1219 270 PRINTS DnaJ domain signature 43 61 IPR001623 -
Gso15g1219 270 PRINTS DnaJ domain signature 61 76 IPR001623 -
Gso15g1219 270 PRINTS DnaJ domain signature 77 97 IPR001623 -
Gso15g1219 270 Gene3D DnaJ domain 40 157 IPR036869 -
Gso15g1219 270 Pfam DnaJ domain 41 102 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1219 Gso-Chr15 12179441 12181001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1219 41 102 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.970 1.47e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1219 - - gmx:100778573 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1219 15 12179441 12181001 Gso9g0350 9 3383323 3384942 GST
Gso7g2066 7 44593640 44595017 Gso15g1219 15 12179441 12181001 PCT
Gso17g0235 17 2164170 2165679 Gso15g1219 15 12179441 12181001 PCT
Gso15g1219 15 12179441 12181001 Gso7g2066 7 44593640 44595017 PCT
Gso15g1219 15 12179441 12181001 Gso17g0235 17 2164170 2165679 PCT