Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1204 ATGAATCTCAGCAACGGCAAGGGATCCACTTCGAGTTCTCCTCTGAAAGCCGGAGATTCTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTGGTGGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTCCGTGCTTGTCTCTATGAAGTGACGAAATGCCAGCGAGCTGAGGTTGCATTGTCTCTCTTGAGAGAGAACAAAAACGGGTTTGATATCGTTTTAAGCGATGTGCATATGCCAGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCGGTTATTATGATGTCAGCTGATGATGGGAAACATGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTGATTAAACCTGTTCGGATTGAGGCTTTGAAGAATATATGGCAGCATGTGATTCGGAAGAGAAAGAACGGTTTGAGAGATGTGGAGCAATCGGGTAGCGTGGAAGAAGGAGATCAGCCTCCAAAGGTATCTGATGATGGAGATTACTCGTCTTCTGTGAATGAAGCCAGAAGCTCTAAGAAGAGGAGGGACGAGGACGAGGAAGGAGATGAGAAGGATGATTCCTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCTGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAACAACTCCTTCATGAGCTCACAAGAAGCAACATTTGGGGGAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGCTGCTGGCCAGTTCCCATCACAAAGTCTAGCCAAGCTTCAAGCCACGGGACTTGGCAGGACAACTGCTAAAGCTGGTGTGCCTATGCCTCTATCTGATCAAAAAAACCTTTTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGTCACTACAACATTTAAGCAACAGTAAGCCTATAAACTTGCTTCATGGAATTCCAACCAACATGGAGCCAAAACAACTCGCCAATTTGCACCAATCTACCCAACCCCTTGGTAGCTTGAATATGCGAGTCAATGCTCCTGTCACACAGAACAACCCTTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAGGTGAAAATGCTGGTTCTCATGTAACCAGGTTTCCGTCATCTTTGGTGCAGCCTACAGTATCAAATGGTATTTCTAATGGTGTTTTGGGAAATGGGATTGCTGGCACCAGCAACATAACTACTTATAATCCAGTTCAACAAAACTCGTCATTGTTGAGTTTTCCCATGAACCAAACAAATGAAATATCTGTCAGTAATTTCCCTCTTAGAAGCAGTCCAGGTATAACTAGTATCACAAATAAAGGTATGTTTCATGAAGAAGGTACCTCTGGTATTAAAGGACCTGGTGGATTTGTTCAAGGGTATGACATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACTGGCATGACATATGATGCTGCTCACCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTGGTCCATCAGAGTTTTCCCACCATGCACCAGACTGTACAAAATAGAGATACTACTTCAATTGGAAAAGCTATGTTCTCCACAGGTGAAGGCATGCATCAAAGTAATCTCCAAAATGTTGGTCAACACCACAATAACCTTCTTCTTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATCCTAGCTGCCAGATTAATAACCTCTTCGCTGATCAATATGGTCAGGAGGATCTTGTCAGTGCATTTCTGAAACAGGGGTGA 1953 0.4393 MNLSNGKGSTSSSPLKAGDSVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCQRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKHVVMKGVTHGACDYLIKPVRIEALKNIWQHVIRKRKNGLRDVEQSGSVEEGDQPPKVSDDGDYSSSVNEARSSKKRRDEDEEGDEKDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNNSFMSSQEATFGGTSINGIDLQTLSAAGQFPSQSLAKLQATGLGRTTAKAGVPMPLSDQKNLFSFENPRLRFGEGSLQHLSNSKPINLLHGIPTNMEPKQLANLHQSTQPLGSLNMRVNAPVTQNNPLLMQMAQSQPRGQMLGENAGSHVTRFPSSLVQPTVSNGISNGVLGNGIAGTSNITTYNPVQQNSSLLSFPMNQTNEISVSNFPLRSSPGITSITNKGMFHEEGTSGIKGPGGFVQGYDMFNELHHQKSHDWDLTNTGMTYDAAHHANPLQGNIDVSPSVLVHQSFPTMHQTVQNRDTTSIGKAMFSTGEGMHQSNLQNVGQHHNNLLLDNSVRVKAERIPDPSCQINNLFADQYGQEDLVSAFLKQG* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1204 650 CDD REC_typeB_ARR-like 31 145 - -
Gso15g1204 650 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Gso15g1204 650 SMART REC_2 29 141 IPR001789 GO:0000160
Gso15g1204 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 635 IPR045279 GO:0009736
Gso15g1204 650 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Gso15g1204 650 MobiDBLite consensus disorder prediction 152 205 - -
Gso15g1204 650 Gene3D - 204 266 - -
Gso15g1204 650 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Gso15g1204 650 MobiDBLite consensus disorder prediction 182 205 - -
Gso15g1204 650 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Gso15g1204 650 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Gso15g1204 650 Gene3D - 29 159 - -
Gso15g1204 650 PIRSF RR_ARR_type-B 5 650 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso15g1204 650 SUPERFAMILY CheY-like 28 149 IPR011006 -
Gso15g1204 650 MobiDBLite consensus disorder prediction 152 170 - -
Gso15g1204 650 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Gso15g1204 650 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1204 Gso-Chr15 12023119 12028185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1204 63 649 Response Regulator Gene Family AT3G16857 48.025 2.95e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso15g1204 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1204 - K14491 gmx:100809583 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1204 15 12023119 12028185 Gso9g0338 9 3281640 3285382 GST
Gso7g2055 7 44502646 44506940 Gso15g1204 15 12023119 12028185 PCT
Gso17g0246 17 2240286 2244522 Gso15g1204 15 12023119 12028185 PCT
Gso15g1204 15 12023119 12028185 Gso7g2055 7 44502646 44506940 PCT
Gso15g1204 15 12023119 12028185 Gso17g0246 17 2240286 2244522 PCT