Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1201 ATGTCGGAAGGAACCAGTCTGGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGACATTGGCACCATTGAGGAAATAGCAGAGGAAACAATTTTGTCTAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAGCAATGTGGCTTTTCAATCAGACGACACCGGACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTTACAAGGAGGGATTTTACTTGCCATTGTGGTGGATATCCCCAGATTAAACCTTCTGATGATGGGAAGGTGCAAAGGAACCGCAAATCATCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGTCAGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGGAACATTCATAATCACGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCCATATCTCCTGATGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAGATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTTGGTTGTCTTCCTTTTACAGAGATAGATGTAAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCACAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAACATATTGCATGGTCCTACAGTTCATCCATTCAATCATATGAGGCATTTGGTGATGCTGTGGTTTTTGATACAACCTATCGTGTAGAAGCTTATGACATGCTGTTGGGAATTTGGCTTGGTGTGGACAATAATGGAATGACTTGTTTCTTTAGTTGTGCACTTCTACGGGATGAAAACATTCAGTCTTTTTCGTGGGCTCTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAAGCTCCACAAACAATATTGACAGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTCAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAATTCCACCGGCTCTACAATTTGGAACAGGTGGAAGATTTTGAAGAGGGCTGGAGGCAAATGGTGGATCAATATGGACTCCACGCAAATAAACATATTATTAGCCTATATTCATTAAGGACATTTTGGGCACTACCATTCTTGAGGCATTACTTCTTTGCAGGATTGACCAGTACATGTCAGTCTGAATCCATTAATGCTTTCATCCAACGGTTCTTGAGTGTGCAGTCTCAATTAGATCGATTTGTGGAGCAAGTGGTTGAAATTGTTGATTTTAATGACCGAGCCGGAGCAACGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAAACAGGTTCACCTATTGAATCCCATGCTGCCACTGTCCTTACTCCTGATGCCTTAAGTAAACTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTTGATGAAGGTCGTTTCCAGGTCAGACACCACTCTCAGTCAGATGGAGGATGCAAAGTATTTTGGGTTGCTTGTCAAGAGCACATCAGCTGCAGCTGCCATTTGTTTGAGTTTTCAGGCATCTTATGTAGACACGTGCTACGGGTCATGTCAACTAATAACTGTTTTCACATTCCTGATCAATATTTACCAGCCCGTTGGCGAGGCAATAATTCATCTTCTGTTAACCACTACCGTGGTACAACCAGTAGGGATCAGTCTGAAAGGATACAATTTTTGGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATTGAAACAGAGGAACGCCTGGATGTTGCTTGCGAGCAAATTTCCATGGCGCTATCACGCATCAAAACCTTTCCTAGGTCCCCACACGGGGTGAATGACATTGCATATAGTTATCCATCAGATTCATTAATCCTGCCACAGGTAGAAGATACTGATGGAATGATTCACGGCTTTACAATCACAAATCCCCACGATTCTATCACTACTGGAAAGCTAAAGGAGAGAAGAGCAAGAGATGGAGTCGATCTCACTAGGAAGCGCAGGCAGTTCTCCTTGCCATCGTGTGCTCAATACGGACATGATGTGTCTGATTGCTCAATAATGGCGGGTGACAATATGAGTGGAGATGCATTAGGATACTTGTAG 2277 0.4199 MSEGTSLVLESSENGTDLSQDDIGTIEEIAEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHCGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSDFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENHNFKYEFKIDSNNRLEHIAWSYSSSIQSYEAFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMTCFFSCALLRDENIQSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVELPQTKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLEQVEDFEEGWRQMVDQYGLHANKHIISLYSLRTFWALPFLRHYFFAGLTSTCQSESINAFIQRFLSVQSQLDRFVEQVVEIVDFNDRAGATQKMQRKLQKVCLKTGSPIESHAATVLTPDALSKLQEELVLAPQYASFLVDEGRFQVRHHSQSDGGCKVFWVACQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPARWRGNNSSSVNHYRGTTSRDQSERIQFLESMVSTFLVESIETEERLDVACEQISMALSRIKTFPRSPHGVNDIAYSYPSDSLILPQVEDTDGMIHGFTITNPHDSITTGKLKERRARDGVDLTRKRRQFSLPSCAQYGHDVSDCSIMAGDNMSGDALGYL* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1201 758 SMART 26again6 562 589 IPR006564 GO:0008270
Gso15g1201 758 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 8 738 - -
Gso15g1201 758 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 738 IPR031052 GO:0006355
Gso15g1201 758 Pfam FAR1 DNA-binding domain 59 152 IPR004330 -
Gso15g1201 758 MobiDBLite consensus disorder prediction 1 20 - -
Gso15g1201 758 ProSiteProfiles Zinc finger SWIM-type profile. 554 587 IPR007527 GO:0008270
Gso15g1201 758 Pfam MULE transposase domain 275 367 IPR018289 -
Gso15g1201 758 Pfam SWIM zinc finger 554 584 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1201 Gso-Chr15 11969014 11973148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso15g1201 MULE 4.4e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1201 - - gmx:100775359 1542.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1201 15 11969014 11973148 Gso9g0334 9 3241933 3246295 GST