Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1198 ATGGGTAGATCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCAGAAGAGGATAAAATCTTGACCGATTACATTCAAGAAAATGGTGAAGGCTCGTGGAAAACCTTGCCTAAGAATGCAGGTTTGTTGAGGTGTGGGAAGAGTTGCCGACTGAGATGGATCAACTATTTGAGAGCTGACGTGAAGAGAGGTAACATCACTCCTGAGGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCTGTGATAGCTGGACGTTTACCGGGACGAACAGACAATGAGATAAAGAACTATTGGAACTCTCACCTTAGGAGAAAGATCTATTGCTTCATGAGATCTCTAAATGAGTCTCTTCCACCCACTGACATGGCTGCTGTAAACTCTGCCACATCCAAGAGAAGAGTTCGCGGTTCAAGAAACAAGCCAGCCACAGAAGAAGAAAAGAACATGGCTTTGAGCCAAAACTCCTTTGAGTCAATGCCTAGTTGCAACAGAGAAGAAGGTGAAGAAATTTCCATGATGGATGCTTGTTATGAAATGGAGAGCATTACAATTAGTAGCACATTTGCATCATGCCCCAGCCTTGAAGCCAGCTTGGGACCATATCATCATTGGTCTGATGATGAAATCATGAAACTTAGTAACATGTTTGAAAATGGGGTGCTTGTGAATCCAAGTGGTAATAATGTAACCCTTAAGGATGAGCCTAATGGAATTGAATGTGGCCAGATGAATGTGGATATAATGGGAACAGATCAAAGCAAGAATAATGCATCAAATGGGGATAGTGGAGAATGGTACCCCAATTGTTCATCAGTGAATTCTGCTATTGATTATCAGTGGTCTGATTGGGACATGGGAGGAAGTGTTCAATCCAATAATCAGTGGAACCTTTGTGATGACCAAGTGATGAATTGCTTGTGGAGTACTGGCATTGGTGAAATAAATTATGGTTTTCATCCATAA 993 0.4199 MGRSPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWKTLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAVLGNRWSVIAGRLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPTDMAAVNSATSKRRVRGSRNKPATEEEKNMALSQNSFESMPSCNREEGEEISMMDACYEMESITISSTFASCPSLEASLGPYHHWSDDEIMKLSNMFENGVLVNPSGNNVTLKDEPNGIECGQMNVDIMGTDQSKNNASNGDSGEWYPNCSSVNSAIDYQWSDWDMGGSVQSNNQWNLCDDQVMNCLWSTGIGEINYGFHP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1198 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso15g1198 330 Gene3D - 71 116 - -
Gso15g1198 330 MobiDBLite consensus disorder prediction 131 171 - -
Gso15g1198 330 CDD SANT 16 61 IPR001005 -
Gso15g1198 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso15g1198 330 SMART sant 66 114 IPR001005 -
Gso15g1198 330 SMART sant 13 63 IPR001005 -
Gso15g1198 330 PANTHER MYB TRANSCRIPTION FACTOR 2 288 - -
Gso15g1198 330 CDD SANT 71 112 IPR001005 -
Gso15g1198 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso15g1198 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso15g1198 330 MobiDBLite consensus disorder prediction 156 171 - -
Gso15g1198 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso15g1198 330 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 288 - -
Gso15g1198 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso15g1198 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso15g1198 330 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1198 Gso-Chr15 11914745 11919206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1198 1 309 MYB Transcription Factor Family AT5G49330 42.978 1.39e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g1198 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1198 K09422 - gmx:100819736 698.738