Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1193 ATGATGTCACACAACTTAACGGGGCAGCTTGTGAGTGCAGAGATACATGGCTTTCACACGTTGGAGGATTTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATCCATGCCATACTCTGTAATCACAAATATTTCAAGATCAATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAACCGATGGGAAAACTGTCAAAGAAGCCCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAATCTGGAGCACATAGTCCTTGTTCATTATCGTGACACACAAGAGTTACAATTGCAAGGTTCTCCTGCTACACCCGTAAATTCAAATTCAAGTTCTGCCTCTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTGGATTCTGGGGTGAACAGTGCTTATGCTGTTGAGCTTAATGACAATTTAACTGCCAAAAGTCATGAGCAGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTCCAAATGTCAACACTTCTACTACATCTAATGGAGGCAACGTCCCATATTCATTTCAAGAAAATCAAAGTTTACTGAGTGGAAGATTTGGCAATGTATCCAGTAATCCTTCAGCAGAAATTCCTTCTTTTGGTAATTTAACTCAGCCAGTTTCTGGGAGCAATAGTGCCCCTTACAGTTTCCCAGATAGTGCTATTCTTCTGAAAAATAGTCCTATATCATCGGGAGGCGTTGACACCTTGGGCACTTTGGTCAACGAAGGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATGAACATCATATCGGATACACCATGTTCCATAGATGAATCAGCTCTTAAAGCATCAATTTCTTCTGTTCATGTACCATATTCATCACTGGTGGCAGATAATCTGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTACATGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAATAACTATGAAAACCTTGCAAAGTCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGGTGCTGCGTACCACCACACTCGCCTGGATTGGTCAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGAGCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTTCAGACACGAGCCTTAACATTTTCTCAAGTAAAGTATCACCGAATGCACTGAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATATATCTCCAAAAGTTGGCAATACTTGATGAAGTCAATTGATGACAATACAATTCCATTTTCAAAAGTAAAAGATTCCTTGTTTGAAACTGCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCAGAAAGAGTACTGAATATGATGCGCAAGGGCAAGGTGTAATTCATTTGTGTGCAATGCTAGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCGGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATCTTATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGCCAAACTTGGTCACAGATCCAACTCCACAATATCCTGGTGGATGTACTGCTGCTGATCTTGCCTATATGAAGGGATGTGATGGCTTAGCTGCTTTCCTTTCTGAGAAGTCTCTGGTTGAGCAGTTCAATGAAATGAGTTTGGCTGGAAATATCAGTGGCTCACTGGAAACTAGCTCAACTGATCCAGTAAATGCTGAGAACCTTACTGAGGACCAACTGTACGTTAAGGAGACTTTGGCAGCTTACCGTATATCTGCCGAGGCTGCAGCACGGATTCAAGCTGCATTTAGGGAGCATTCATTTAAATTACGATATAAGGCAGTTGAAATTATCAGCCCAGAGGAAGAAGCACGTCAAATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGTCAAAAAAAAAGATGACAGCCGCCGCTCGGATTCAGCATAGATTTCGTACATGGAAGTACCGTAGAGAATTTCTCAACATGCGGCATCAAGCTATCAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGCACGGAAGCAATATCGGAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGTGATCCTGCGTTGGCGTTTAAAGAGAAAAGGCTTTCGTGGTCTCCAGGTTAATCCTGCCAGGGAGGAGACGCAGGAAAGTGATTCAATTGCAGAGGAGGATTTCTTTCGCACCGGCCGGAAACAAGCTGAAGAACGCATTGAGAGGTCTGTCATACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGACACATAATCAAGCAAAGCTGGAACTGGAATTAGAAGAATTCCTTGATTCTGAAGTTGACATGTTACCCAAGACATAG 2736 0.4207 MMSHNLTGQLVSAEIHGFHTLEDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRRCYWLLDKNLEHIVLVHYRDTQELQLQGSPATPVNSNSSSASDPAASWIPSEDLDSGVNSAYAVELNDNLTAKSHEQRLHEINTLEWDDLVVPNVNTSTTSNGGNVPYSFQENQSLLSGRFGNVSSNPSAEIPSFGNLTQPVSGSNSAPYSFPDSAILLKNSPISSGGVDTLGTLVNEGLQSQDSFGTWMNIISDTPCSIDESALKASISSVHVPYSSLVADNLQSSLPEQVFNLTEVSPTWASSTEKTKVLVTGYFHNNYENLAKSNLLCVCGDVSVPVEIVQVGVYRCCVPPHSPGLVNLYLSFDGHKPISQVVNFEYRTPILHEPTASMEEKYNWNEFRLQMRLAHLLFASDTSLNIFSSKVSPNALKEARRFSFKTSYISKSWQYLMKSIDDNTIPFSKVKDSLFETALKNKLKEWLLERIILGRKSTEYDAQGQGVIHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAASYGMEKMVATLLSCGARPNLVTDPTPQYPGGCTAADLAYMKGCDGLAAFLSEKSLVEQFNEMSLAGNISGSLETSSTDPVNAENLTEDQLYVKETLAAYRISAEAAARIQAAFREHSFKLRYKAVEIISPEEEARQIVAAMRIQHAFRNYESKKKMTAAARIQHRFRTWKYRREFLNMRHQAIKIQAAFRGFQARKQYRKIIWSVGVLEKVILRWRLKRKGFRGLQVNPAREETQESDSIAEEDFFRTGRKQAEERIERSVIRVQAMFRSKKAQEEYRRMKLTHNQAKLELELEEFLDSEVDMLPKT* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1193 911 SUPERFAMILY E set domains 359 446 IPR014756 -
Gso15g1193 911 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Gso15g1193 911 MobiDBLite consensus disorder prediction 152 171 - -
Gso15g1193 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 809 IPR027417 -
Gso15g1193 911 SUPERFAMILY Ankyrin repeat 543 656 IPR036770 -
Gso15g1193 911 SMART iq_5 781 803 IPR000048 GO:0005515
Gso15g1193 911 SMART iq_5 758 780 IPR000048 GO:0005515
Gso15g1193 911 SMART iq_5 860 882 IPR000048 GO:0005515
Gso15g1193 911 SMART iq_5 705 727 IPR000048 GO:0005515
Gso15g1193 911 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Gso15g1193 911 ProSiteProfiles Ankyrin repeat region circular profile. 595 623 - -
Gso15g1193 911 SMART ANK_2a 595 624 IPR002110 GO:0005515
Gso15g1193 911 Pfam IQ calmodulin-binding motif 786 803 IPR000048 GO:0005515
Gso15g1193 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 908 - -
Gso15g1193 911 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Gso15g1193 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 908 - -
Gso15g1193 911 Pfam Ankyrin repeats (3 copies) 541 624 IPR002110 GO:0005515
Gso15g1193 911 SMART CG_1_2 30 147 IPR005559 GO:0003677
Gso15g1193 911 Gene3D - 523 663 IPR036770 -
Gso15g1193 911 ProSiteProfiles IQ motif profile. 706 735 IPR000048 GO:0005515
Gso15g1193 911 Coils Coil 874 894 - -
Gso15g1193 911 Gene3D Immunoglobulins 354 449 IPR013783 -
Gso15g1193 911 ProSiteProfiles IQ motif profile. 740 769 IPR000048 GO:0005515
Gso15g1193 911 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Gso15g1193 911 Gene3D - 758 806 - -
Gso15g1193 911 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Gso15g1193 911 MobiDBLite consensus disorder prediction 152 172 - -
Gso15g1193 911 ProSiteProfiles IQ motif profile. 782 806 IPR000048 GO:0005515
Gso15g1193 911 Pfam IPT/TIG domain 360 445 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1193 Gso-Chr15 11836670 11846664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1193 30 894 CAMTA Transcription Factor Family AT3G16940 55.696 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso15g1193 CG-1 9.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1193 K21596 - gmx:100819198 1790.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1193 15 11836670 11846664 Gso9g0327 9 3145700 3156017 GST
Gso7g2043 7 44389573 44398289 Gso15g1193 15 11836670 11846664 PCT
Gso17g0257 17 2334236 2348299 Gso15g1193 15 11836670 11846664 PCT
Gso15g1193 15 11836670 11846664 Gso7g2043 7 44389573 44398289 PCT
Gso15g1193 15 11836670 11846664 Gso17g0257 17 2334236 2348299 PCT