Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1172 ATGGCTTCAGCAAGCGGAGCGGAGAATTCCTCCGTCCCGCCGTCGCCGTTGCCGCCTCCGCCGCCGCCGCAAATCCACACCTCGCGGACGAAGCTGAGCCACCACCACCACAACAACAACAACAACAACAACAACAACATCGACTCCACGAGCAAGGCCATCGCGCAGTACACGGAGGACGCGCGGCTCCACGCCGTCTTTGAGCAGTCCGGCGAGTCCGGGAGGTCCTTTGACTACTCCCAATCAATCCGCGTCACATCGGAATCCGTCCCGGAGCAGCAGATAACGGCTTACCTTCTCAAAATTCAGCGCGGCGGCTTCATCCAGCCCTTCGGCTCCATGATCGCCGTCGACGAGCCCTCCTTCCGCATCCTTGCCTACTCCGACAACGCCCGTGACATGCTCGGCATTACTCCACAGTCCGTCCCTTCGCTCGACGACAAGAACGACGCCGCCTTCGCGCTCGGAACCGATATCCGAACCCTCTTCACTCACTCCAGCGCCGTTCTCCTCGAAAAGGCCTTCTCCGCGCGCGAAATTAGCCTCATGAACCCTATCTGGATTCACTCCAGAACCTCCGGGAAGCCTTTCTATGGAATCCTCCACCGAATTGACGTCGGAATTGTCATCGATTTGGAGCCTGCGCGGACGGAGGATCCTGCCCTCTCCATCGCCGGAGCTGTCCAGTCGCAGAAGCTCGCGGTTCGCGCGATTTCGCAGCTTCAATCTCTCCCCGGTGGCGATGTTAAGCTTCTTTGTGATACTGTTGTTGAGAGTGTCAGGGAATTGACAGGGTATGATAGGGTTATGGTTTATAGGTTTCATGAGGATGAGCATGGGGAGGTTGTTGCTGAGACTAAGAGGCCTGATTTGGAGCCTTACATTGGATTGCATTATCCCGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTCATGCTTCTGCTGTGAGGGTGGTGCAGGATGAGGCTCTTGTGCAGCCTCTGTGTTTGGTTGGGTCCACGCTCAGGGCGCCTCACGGTTGCCATGCTCAGTATATGGCTAACATGGGCTCGACTGCGTCGTTGGTGATGGCTGTTATTATCAATGGGAATGATGAGGAAGGTGTTGGTGGCCGCACTTCGATGAGGTTGTGGGGGCTTGTTGTTTGCCACCATACCTCTGCTAGGTGTATTCCTTTTCCCTTGAGGTATGCTTGTGAGTTTCTGATGCAGGCGTTTGGGCTGCAGTTGAACATGGAGCTTCAGTTGGCCGCACAGTCGTTGGAGAAGCGGGTTTTGAGGACACAGACTCTGTTGTGTGATATGCTTCTCAGGGACTCTCCTACTGGCATTGTAACTCAGAGTCCTAGTATTATGGACTTGGTGAAGTGTGACGGAGCTGCTCTTTATTACCAAGGGAACTATTATCCGTTGGGTGTGACTCCAACTGAGGCTCAGATAAGGGATATTATTGAGTGGTTGTTGGCCTTTCATAGAGATTCGACTGGTTTGAGTACTGATAGTCTGGCTGATGCTGGCTATCCTGGGGCTGCCTCGCTTGGGGATGCAGTTTGTGGGATGGCGGTTGCTTATATTACAGAGAAGGATTTTCTTTTCTGGTTCAGGTCGCACACGGCGAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGACAAGGATGATGGGCAGAGAATGCATCCCCGTTCTTCCTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGTAGCTTGCCGTGGGAGAATGCGGAAATGGATGCAATTCACTCTTTGCAGCTTATTCTGCGTGACTCGTTTAAAGATGCTGAGCATAGCAATTCTAAGGCTGTTTTGGATCCCCGTATGTCGGAACTAGAGTTGCAAGGGGTCGATGAACTAAGTTCTGTAGCCAGAGAGATGGTTAGATTGATCGAAACAGCCACTGCTCCAATATTTGCTGTTGATGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTTCAGAATTGACAGGACTCCCAGTTGAGGAGGCTATGGGGAAGTCCTTGGTTCGCGATCTTGTGTTTAAGGAGTCTGAAGAAACTGTGGACAAGCTTCTTTCTCGTGCTTTAAAAGGTGAAGAAGATAAGAATGTTGAGATAAAAATGAGGACGTTTGGCCCAGAACATCAAAATAAGGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATGTAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAATTGTGATGGACAAATTCATCAACATACAAGGCGACTACAAGGCTATTGTACATAATCCAAATCCTTTGATCCCTCCCATTTTTGCATCGGATGATAACACGTGTTGCTTAGAGTGGAACACTGCAATGGAAAAGCTTACTGGTTGGAGCCGCGCGGATGTCATTGGAAAAATGTTGGTGGGAGAGGTTTTCGGCAGTTGCTGTCAGTTGAAGGGTTCAGATTCAATAACAAAGTTCATGATTGTCTTACACAATGCGCTTGGTGGACATGATACAGATAGATTCCCTTTTTCATTTCTTGATCGGTATGGCAAGCATGTGCAAGCTTTCCTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGGGCATTTTGCTTTTTGCAAATTGTGAGTCCGGAACTTCAACAGGCTCTGAAGGCACAGAGACAACAAGAGAAGAATTCATTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGGAGTTAAGAATCCTTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACATGCTTGTCCAATGAGCAAAAACAGTTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGTTAAAGATAATACACGATGTTGATATTGAAAGCATTGAGGATGGGTCCCTGGAGCTTGAAAAGGGGGAATTCTTGCTTGGAAATGTCATAAATGCAGTTGTTAGCCAAGTAATGCTACTGTTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAAGAAATCAAGACATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTGTTGTCTGATTTCTTATTGAATATAGTGCGCTATGCACCATCTCCAGATGGCTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCAGATGGGCTCACTCTTCTCCATGCTGAATTTAGAATGGTATGTCCTGGTGAAGGTCTTCCTCCTGAATTGATTCAAAACATGTTCAATAACAGTGGGTGGGGGACTCAAGAAGGTTTAGGGCTGAGCATGAGCAGGAAGATTCTAAAGCTAATGAACGGCGAAGTGCAGTATATCAGGGAGGCCCAACGGTGCTACTTCTATGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAAAGTGTTAA 3450 0.4777 MASASGAENSSVPPSPLPPPPPPQIHTSRTKLSHHHHNNNNNNNNNIDSTSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSIRVTSESVPEQQITAYLLKIQRGGFIQPFGSMIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHSSAVLLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVAETKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHSNSKAVLDPRMSELELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLVGEVFGSCCQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMDGQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLEATCLSNEQKQFLETSAACEKQMLKIIHDVDIESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQNMFNNSGWGTQEGLGLSMSRKILKLMNGEVQYIREAQRCYFYVLLELPVTRRSSKKC* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1172 1149 Pfam Phytochrome region 439 613 IPR013515 GO:0006355|GO:0009584
Gso15g1172 1149 Pfam PAS fold 644 759 IPR013767 GO:0006355
Gso15g1172 1149 Pfam PAS fold 775 894 IPR013767 GO:0006355
Gso15g1172 1149 Gene3D PAS domain 788 898 - -
Gso15g1172 1149 PRINTS Phytochrome signature 163 185 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 263 282 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 348 369 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 456 476 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 541 560 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 574 592 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 644 660 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 663 678 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 737 754 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 PRINTS Phytochrome signature 757 777 IPR001294 GO:0006355|GO:0009584
Gso15g1172 1149 MobiDBLite consensus disorder prediction 1 48 - -
Gso15g1172 1149 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 991 1137 IPR036890 -
Gso15g1172 1149 SUPERFAMILY GAF domain-like 228 423 - -
Gso15g1172 1149 ProSiteProfiles Histidine kinase domain profile. 923 1143 IPR005467 -
Gso15g1172 1149 SMART pas_2 774 844 IPR000014 -
Gso15g1172 1149 SMART pas_2 643 710 IPR000014 -
Gso15g1172 1149 SMART pas_2 101 171 IPR000014 -
Gso15g1172 1149 CDD PAS 652 759 IPR000014 -
Gso15g1172 1149 Gene3D - 229 587 IPR029016 -
Gso15g1172 1149 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1028 1138 IPR003594 -
Gso15g1172 1149 Gene3D PAS domain 101 351 - -
Gso15g1172 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 646 755 IPR035965 -
Gso15g1172 1149 CDD HATPase_Phy-like 1027 1139 IPR044767 -
Gso15g1172 1149 SMART HKATPase_4 1028 1141 IPR003594 -
Gso15g1172 1149 SUPERFAMILY GAF domain-like 434 611 - -
Gso15g1172 1149 Pfam PAS fold 97 215 IPR013654 GO:0006355
Gso15g1172 1149 PIRSF Phytochrome_conventional 30 1148 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Gso15g1172 1149 TIGRFAM sensory_box: PAS domain S-box protein 648 763 IPR000014 -
Gso15g1172 1149 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 248 416 IPR016132 -
Gso15g1172 1149 Gene3D - 899 978 - -
Gso15g1172 1149 Gene3D - 979 1146 IPR036890 -
Gso15g1172 1149 SMART gaf_1 248 436 IPR003018 GO:0005515
Gso15g1172 1149 ProSiteProfiles PAS repeat profile. 641 712 IPR000014 -
Gso15g1172 1149 CDD HisKA 916 972 IPR003661 GO:0000155|GO:0007165
Gso15g1172 1149 Gene3D - 431 604 IPR043150 -
Gso15g1172 1149 Pfam His Kinase A (phospho-acceptor) domain 920 980 IPR003661 GO:0000155|GO:0007165
Gso15g1172 1149 MobiDBLite consensus disorder prediction 12 26 - -
Gso15g1172 1149 Pfam GAF domain 249 426 IPR003018 GO:0005515
Gso15g1172 1149 ProSitePatterns Phytochrome chromophore attachment site signature. 348 357 IPR013516 -
Gso15g1172 1149 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 1144 - -
Gso15g1172 1149 PANTHER PHYTOCHROME 39 1144 - -
Gso15g1172 1149 SMART HisKA_10 916 980 IPR003661 GO:0000155|GO:0007165
Gso15g1172 1149 ProSiteProfiles PAS repeat profile. 775 827 IPR000014 -
Gso15g1172 1149 Gene3D PAS domain 636 769 - -
Gso15g1172 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 789 892 IPR035965 -
Gso15g1172 1149 SUPERFAMILY PYP-like sensor domain (PAS domain) 102 216 IPR035965 -
Gso15g1172 1149 CDD PAS 786 894 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1172 Gso-Chr15 11508096 11515148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1172 24 1141 Histidine Kinase Gene Family AT4G16250 73.670 0.0 1750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1172 K12121 - gmx:100794865 2244.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1172 15 11508096 11515148 Gso9g0304 9 2904876 2911678 GST