Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1162 ATGGCGGAGGAGAAAAGAGAAGAGGAAGTAGCGCACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATGAGATTCCCAACAACAACAACTTGATGATGACTTTCCCTTTCCAAGTACCACCCACCATCTTCGACGTCATGATGATGCCTTCGTCTTCTTCTTCCTTCATTGACCTGCTCGGCGTGCAGGACTACAACGCGCCGTTATTCGATTGCCTTCCCGGCGGCGGATACCGCCCTGCGCCGTCTCCGGCGAGCTCCAACGTCCCAGACTCCTCCGAGGTGTTGAACACGCCGGCTGCGTCGCCTAATTTGTCGTCGATTTCGTCGTCGTCGAATGAGGCTACGGTCAATAACAACGCCGAACAGAGTTTGAAACCTGGGAATGACCAAGAAGAAGCAGAAGCAGAGGAAGAAGGTGGTAATGGAGGCAGAGGAGATGACCAAGATCAAGACAAGACTAAGAAACAGCTGAAACCGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAGAACAGCCCTTATCCCAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGTTCCTCCGACGACCCTTCCATCGTTGTTACAACCTACGAAGGGCAGCACAGGCACCCGTGCCCTGCTTCGGCACGGGCTAGCTTCGGCTTTGTGTCCGAACCCAGCAGCTTCGGATACGCCGGTTCGTTTGGTCCCTCACACTTTATGCTGCCACATCAGCACCACCAGCAAGCACAATCTTCGGCTTTGATGTATAATAACTCCACCACCCCTCCTTTGAATGTTGTTAGCTCCAGTAGTACTAGTAACTACATGAACACGACGTCGTTTGGTGGATTTGTTCAGGATCACGCGAACCGTCATGGTTTTGGGCATGAGGCTTTGTTGAGGGACAATGGGCTTCTTCAGGACATTATTGTGCCAACTCAGCTTGGTATGGTTTGTAATGCTCTCTAA 1071 0.5173 MAEEKREEEVAHPNNSSSTTMPFSDEIPNNNNLMMTFPFQVPPTIFDVMMMPSSSSSFIDLLGVQDYNAPLFDCLPGGGYRPAPSPASSNVPDSSEVLNTPAASPNLSSISSSSNEATVNNNAEQSLKPGNDQEEAEAEEEGGNGGRGDDQDQDKTKKQLKPKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSDDPSIVVTTYEGQHRHPCPASARASFGFVSEPSSFGYAGSFGPSHFMLPHQHHQQAQSSALMYNNSTTPPLNVVSSSSTSNYMNTTSFGGFVQDHANRHGFGHEALLRDNGLLQDIIVPTQLGMVCNAL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1162 356 ProSiteProfiles WRKY domain profile. 181 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1162 356 MobiDBLite consensus disorder prediction 82 174 - -
Gso15g1162 356 Gene3D WRKY domain 170 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso15g1162 356 MobiDBLite consensus disorder prediction 13 27 - -
Gso15g1162 356 SMART WRKY_cls 186 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1162 356 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 81 346 - -
Gso15g1162 356 MobiDBLite consensus disorder prediction 1 27 - -
Gso15g1162 356 MobiDBLite consensus disorder prediction 140 159 - -
Gso15g1162 356 MobiDBLite consensus disorder prediction 87 129 - -
Gso15g1162 356 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 346 IPR044810 GO:0003700
Gso15g1162 356 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso15g1162 356 SUPERFAMILY WRKY DNA-binding domain 178 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1162 Gso-Chr15 11363742 11366578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1162 93 349 WRKY Transcription Factor Family AT5G49520 50.376 3.68e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso15g1162 WRKY 1.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1162 - - gmx:100812252 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1162 15 11363742 11366578 Gso9g0294 9 2810224 2812424 GST
Gso15g1162 15 11363742 11366578 Gso7g2011 7 44139202 44142197 PCT
Gso15g1162 15 11363742 11366578 Gso17g0291 17 2600634 2603731 PCT