Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1161 ATGGATAACGATTATGAAACTATTTCATTCCTGATAGAGGACAGCGAAAACACCACTGCTAAAGAAGCTAGGAGTGGAAAGGACATCCAAGGTATAACTTGGGAAACAGAAACATCGAATTATAGAAGTCGTGAGACATTTAGACAACATAGGTCAGAAAGTCTCCTGAATGGGCCTGAAGAACACTTATCAATTAAACAGGCCAAGCAGGAATGTCAATCAACAGTAAAAGGAGGGGAGTTTTATAATTTTTATCAATACAATAATTGTTTAATACCAACAATACAAGATTGGGCACTCGCGGATTATGCTGGTAGGCTTTGGTCCACGTCAAAGCATGATTTATATCTCTCTGCAGGTACCCAAATTTGTCACTGGAATGCATTAACATCCACGAACACTGAAATCTTGGATTTGGAAGGGCACGTTGCTCCGTCTGAGGAACATCCTGGAGCCTTCATGGAAGGATTGACTGAGACACGGCGGATTGATGCAATGGCTGTAGGCCATAAGTTGTTGATTGTTGGAGGCAATGAAGGACAACTGATTTGCAAGCACTTGGATCGTCCCGGGATCAGTTTTTGTTTCAGATCAGATGATCCAAGAATGATAAATGCTATTGAGATTTATAAGTGTCCCACTCTCACCAGTGAAGTTATTCATTTCATGGTTTCATATGAAGAGGGTAGTGTCAGAATCTTTGATGTAGAGACATTTCAGTTTTCACATTTTGAATTTCCATGGCCCGTGAGGCATGCTTCATCAAGCCCAGATGGACGACAACTCGTAGTTGTTGGAGACAAGCCGGAAGGGACACTAGTGGATTCTCAAACAGGATTGATCATCCAATATTTTGGTGGACATTTTGGTTACTCATGTTCGTCTGCATGGCATCCTGATGGACACAGATTTGCTACTGGAAACAGAGATAGAACATGTCGCATTTGGGATGCTCGAAATTTGTCAAAATCTGTTTTTGCTCTTGGGGGCAACGTCAGCACTATTTCTTCAATAAGTTTCACATCTGATGGACGCTTTATGGCAATGAGTGAAAAGCAAGATTTTGTGCATGTGTATGATGTAGGGGCTGACTTCAAGAGAGAGCAGGAGATAAATTTTTTTGGATATGTCTCTGGATTATGTTTTAGTCCTGACACAGAATATCTTTTTATCAGTGTCTCCATGTTTACTTTTCCAACCCTTTTATTGTACAACCGACGCAGACACGAGTACTACTACCTAGATTCTATGCCTTGA 1257 0.4097 MDNDYETISFLIEDSENTTAKEARSGKDIQGITWETETSNYRSRETFRQHRSESLLNGPEEHLSIKQAKQECQSTVKGGEFYNFYQYNNCLIPTIQDWALADYAGRLWSTSKHDLYLSAGTQICHWNALTSTNTEILDLEGHVAPSEEHPGAFMEGLTETRRIDAMAVGHKLLIVGGNEGQLICKHLDRPGISFCFRSDDPRMINAIEIYKCPTLTSEVIHFMVSYEEGSVRIFDVETFQFSHFEFPWPVRHASSSPDGRQLVVVGDKPEGTLVDSQTGLIIQYFGGHFGYSCSSAWHPDGHRFATGNRDRTCRIWDARNLSKSVFALGGNVSTISSISFTSDGRFMAMSEKQDFVHVYDVGADFKREQEINFFGYVSGLCFSPDTEYLFISVSMFTFPTLLLYNRRRHEYYYLDSMP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1161 418 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 320 - -
Gso15g1161 418 Pfam WD domain, G-beta repeat 285 317 IPR001680 GO:0005515
Gso15g1161 418 SUPERFAMILY TolB, C-terminal domain 223 406 - -
Gso15g1161 418 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 320 IPR001680 GO:0005515
Gso15g1161 418 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 2 417 - -
Gso15g1161 418 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 417 - -
Gso15g1161 418 SMART WD40_4 278 317 IPR001680 GO:0005515
Gso15g1161 418 SMART WD40_4 321 360 IPR001680 GO:0005515
Gso15g1161 418 Gene3D - 204 410 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1161 Gso-Chr15 11354455 11357648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1161 258 394 Miscellaneous Gene Families AT5G08390 26.619 3.98e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1161 - - gmx:100791713 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1161 15 11354455 11357648 Gso9g0292 9 2799218 2800920 GST