Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1149 ATGGAAGTGAAAGGAAGGATAAGCAACTCCACCATCACCACCACCACAATCCAAAGTGAGGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAGGATCTTGCTCTCATCAATTACATTGCTAATCATGGTGAAGGTCGATGGAACTCCCTAGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGTCCCGATGTTCGACGTGGCAACATCACACTTGAAGAACAGCTTCTTATTCTCGAGCTCCATGGTCGCTGGGGAAACCGATGGTCTAAAATTGCTCAATATTTGCCTGGAAGAACCGATAATGAGATAAAGAATTATTGGAGAACCCGTGTCCAAAAGCAAGCCAAGCAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCCGCCGCGGCCGCCACCACTGCCACGGCCACCGTGGGTTCTCCAACGGCATCAGCTAGTGCTACTACAACCATCACCACTAACAACAACGCCACCACATACAACTACGAGAACAACAACAACAACAACCTTAACAACAGTTTTGAAGTGCACAGTGGGAACATGATGTTGAGAAATCCAGCAATCATGAACATTAATAATTTTGTTGGTTCACACAGTTACACTCCAGAGAATAATAGCACGGGTGCCTCATCGGATTCATTTGGTGCTCAGGTTTCGCCTGTCTCGGACTTGACTCAGGATTATTACAATAATGTCACGGTTGAGAATAATAACAACAACAATAACCCTAATCCTGAGTATTACCAACAAGCACATGATCAATTGAGTTTCTTAGACTGCATCACAAGCCCTTCAGGGTTGTTCGATTTCCAGTCCATGGAACCAAACACCCCGTGGATTCAGAGTAATGTTGGGGACACGTCAACCAACGGTTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAACTCTCTGACAACATGTGA 1026 0.46 MEVKGRISNSTITTTTIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAAATTATATVGSPTASASATTTITTNNNATTYNYENNNNNNLNNSFEVHSGNMMLRNPAIMNINNFVGSHSYTPENNSTGASSDSFGAQVSPVSDLTQDYYNNVTVENNNNNNNPNPEYYQQAHDQLSFLDCITSPSGLFDFQSMEPNTPWIQSNVGDTSTNGFWNVENMLLFQQLSDNM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1149 341 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Gso15g1149 341 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Gso15g1149 341 SMART sant 79 127 IPR001005 -
Gso15g1149 341 SMART sant 26 76 IPR001005 -
Gso15g1149 341 CDD SANT 95 123 IPR001005 -
Gso15g1149 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gso15g1149 341 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Gso15g1149 341 Gene3D - 24 80 - -
Gso15g1149 341 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Gso15g1149 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Gso15g1149 341 PANTHER MYB TRANSCRIPTION FACTOR 2 338 - -
Gso15g1149 341 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Gso15g1149 341 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 338 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso15g1149 341 Gene3D - 84 147 - -
Gso15g1149 341 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1149 Gso-Chr15 11168594 11170962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1149 20 328 MYB Transcription Factor Family AT3G06490 53.681 2.39e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g1149 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1149 K09422 - gmx:100305347 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1149 15 11168594 11170962 Gso9g0275 9 2640218 2642653 GST