Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1141 ATGGCGACAGCGGAGGCAGCTTCTGCTGGGCTTGGTCCCAGATATGCACCTGATGATCCTACCCTTCCACAACCGTGGAAGGGGTTGATTGATGGCAGCACTGGTCTTTTATACTATTGGAATCCTGAAACCAATGTTACGCAATACGAAAAACCGACACCACCAGTGCCTTCAGGCCCTGCGCCGAGCTTGGCACCTATACCAGGGGCTCATACAGTGCAGCCTGGTGGAAAGGTGCAGCAGCATGGGCAGCAGATGCAGCAGGTGCAATCCTCGCAACAGCAGATGGGTCACCTTACCCAACAGCATGGCCAATCTATGCCACCGCAGCAGCAGAGTCCCCATATGGCACAGGTCACTCAGCAGCAGTCCTCTCACGGTGCTCAGGCAGCACAGCAACAGAACCAACATGGGCAGAAAATGATGCAGCAGCCTCAAGGGCAGCAAATGATGCAGCAGCCCCAAGGGCAGCAAATGATGCAGCAGCCCCAAGGGCAGCAAATGATGCAGCAGCCCCAAGGGCAGCAAATGATGCAGCCTCAAGGACATCAAGCCAGGCAGCAAATGATGCAGCCTCAAGGACAGCAAATGCATCGTCAGATGCCGCCACAGGCGATCCATTCCCAGCATTTTGTGCAAGGAATGCCTCAGGATCATGGTTCACACATTGTACAACCACAAACACATCAATTCACTCCCCAAAACATGCATTATATGTCGTATCAGCAAAATGCAATTACATCCAGGCAACCAAACTCCCAGCACAGTCAGCCAAACATGGTATCACCTGGGCAACCTAACTCCCAGCAGGTTCAGCATAACATGCACGGTCAGCCCTTTGAAAACCAACAAACAACATATCCAAAGGTAGAGGAAGTGGATTCTAAAAATGGAAGCCAGGTTGGACATTCGCCATCCCAGTATCCACAAAGGAGTGCCTTGCCCGTTCAGAACAACCAGAACATTCCTGCCGAAGTTGGTTCTGGTCAAGTACCTAATGTAGGTGTCAATGCTGGCCAACCACAACAATTCAGGGCCTTATCTAACAGTATGCAACAATCGCCCTCTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAGCCAGATGAGCCCAGGAATGATGCATGGTCATCCATCCAATGTCCTTCCTTCTGGCCAAAAGATGGGTCCCGAGGATAGCTTACGTGTTAGAGCAGGGAATGAATATTACTATAATTCTAACAAAGATATGGCAACAATGGGTCGTCAGCAGCCAGATATAACTCCAATACCCATTCCAAGAAATCAGCAGGATATGAGGATTGGCAACACTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATGCTGTGCCTAGCATGTTTGTTCCTCCAATAGGAGGACCTTCACCTCTCTCTACTAACCCTTTAATGAGGCCTCCTTATATGGGATCTTCAGATGCTACTGATCTCTCACCAGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCAACGGGTGACAACATTCCACCTCCTTTCATGACATTTGATGCTACTGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGCTTCTCAAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTCGCAATTGCCAAAACAGGCTCTGGAAAAACATTAGGCTACTTAATGCCTGCCTTCATTCTTCTTAGACAGCGATGTAACAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCGTCAAATTTGGTCGATCATCACGAGTCTCTTGCACGTGCTTGTATGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTGGACCGGGGAGCAGACATTGTTGTTGCCACACCCGGTCGGCTCAACGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCGCTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGATTGTGAATGAGATTCCACCACGCAGACAAACTCTCATGTACACAGCAACCTGGCCAAAAGAAGTAAGAAAGATTGCTAGCGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAGTGTAGACGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTTCCACAAATGGAGAAACAGAGGCGTTTGGAGCAAATCCTCAGATCCCAAGAACGGGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGACCAGCTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGTGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAAGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCTACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTAATAAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGGGCAGGTGCTACTGGAGTGTCATATACCTTTTTTTCTGAGCAGGACTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGGCAGATGGCTTTGCGTGGGCCATCGAACTTTGGAAAGGATCGGGGTGGGGTGAGCCGGTTTGACTCTGGTGGTGGTGGTGGGCGTTGGGATACTGGTGGTCGTGGTGGCATGAGGGATGGTGGCTTTGGCGGTCGTGGAGGTGGCATGAGGGATGGTGGTTTTGGTGGACGTGGCGGTGGGTTTGGGGGACGTGGTGGTGGCATGAGGGATGGCAGTTTTGGTGGACGTGGCGGTGGCTTTGGTGGTCGTGGTGGCATAAGGGATGGAGGTAGCGGGCAAGGTGGGAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGAGGATCTGGTGGCCCTCGTGGTGGGCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGACCGGTACAACATGGATGGGCGTGGACAAGGTCGTGGACGTGGAAGGTTTGACAATAGAAGAGATGTTTCATATAAAGGTAGAGGCAGAAGTTATAGTCGTAGCCCTGAAAGAGTCAGAACATGGGATTATAGCAGAAGTAGCAGCAGAAGTCGTAGCAGAAGTAGAAGCAGGAGTTGGAGCAGGGGCCGTAGTCGAAGCCGCAGCTGGTCTCGTGGTCGTAGTCGTAGCTATAGCCGTAGTATTAGTCCACGTCGTAACCGCAGTCGTAGCCGTGGTCGTAGTTACAGTCGTAGCCACAGCCGCAGCCCCAGTTATGATAGGCGTAATAGGTCAGATCAACAACTTCCTGATCAAAAGGATCTCAGGGCACAGGAAGTAGGAACTTCAGATCCAAGAATGCTTCCCGTGTCTTCTGGTTCTGGCTCACAAGGGAATTCCTTTTTGGGAACTGAACAAGTAGAGCAGCAACCTGTTGTTAGTAGCACTGATGCAGGTAATCCAGAAGCTGTAGCAGACCTTAGTCATCAATCAGCTTCTGATATTTAG 3606 0.49 MATAEAASAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPTPPVPSGPAPSLAPIPGAHTVQPGGKVQQHGQQMQQVQSSQQQMGHLTQQHGQSMPPQQQSPHMAQVTQQQSSHGAQAAQQQNQHGQKMMQQPQGQQMMQQPQGQQMMQQPQGQQMMQQPQGQQMMQPQGHQARQQMMQPQGQQMHRQMPPQAIHSQHFVQGMPQDHGSHIVQPQTHQFTPQNMHYMSYQQNAITSRQPNSQHSQPNMVSPGQPNSQQVQHNMHGQPFENQQTTYPKVEEVDSKNGSQVGHSPSQYPQRSALPVQNNQNIPAEVGSGQVPNVGVNAGQPQQFRALSNSMQQSPSGSDLYYQHGPNFHSQMSPGMMHGHPSNVLPSGQKMGPEDSLRVRAGNEYYYNSNKDMATMGRQQPDITPIPIPRNQQDMRIGNTPFQNVMPSGNGSGIAGNAVPSMFVPPIGGPSPLSTNPLMRPPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRCNNSLNGPTVLVLAPTRELATQIQDEVVKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKDRGGVSRFDSGGGGGRWDTGGRGGMRDGGFGGRGGGMRDGGFGGRGGGFGGRGGGMRDGSFGGRGGGFGGRGGIRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRYNMDGRGQGRGRGRFDNRRDVSYKGRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRNRSRSRGRSYSRSHSRSPSYDRRNRSDQQLPDQKDLRAQEVGTSDPRMLPVSSGSGSQGNSFLGTEQVEQQPVVSSTDAGNPEAVADLSHQSASDI* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1141 1201 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 328 985 - -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 1012 1069 - -
Gso15g1141 1201 Pfam WW domain 22 52 IPR001202 GO:0005515
Gso15g1141 1201 MobiDBLite consensus disorder prediction 1151 1183 - -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 1 28 - -
Gso15g1141 1201 SMART ultradead3 535 738 IPR014001 -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 49 199 - -
Gso15g1141 1201 CDD WW 23 54 IPR001202 GO:0005515
Gso15g1141 1201 MobiDBLite consensus disorder prediction 1120 1146 - -
Gso15g1141 1201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 547 721 IPR014001 -
Gso15g1141 1201 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 516 544 IPR014014 GO:0003724
Gso15g1141 1201 MobiDBLite consensus disorder prediction 77 199 - -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 897 1201 - -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 246 273 - -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 292 313 - -
Gso15g1141 1201 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Gso15g1141 1201 Gene3D - 726 896 IPR027417 -
Gso15g1141 1201 SMART helicmild6 771 855 IPR001650 -
Gso15g1141 1201 MobiDBLite consensus disorder prediction 1070 1116 - -
Gso15g1141 1201 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 667 675 IPR000629 -
Gso15g1141 1201 Gene3D - 492 725 IPR027417 -
Gso15g1141 1201 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Gso15g1141 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 587 870 IPR027417 -
Gso15g1141 1201 CDD SF2_C_DEAD 735 864 - -
Gso15g1141 1201 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 328 985 - -
Gso15g1141 1201 Pfam Helicase conserved C-terminal domain 747 855 IPR001650 -
Gso15g1141 1201 SMART ww_5 21 54 IPR001202 GO:0005515
Gso15g1141 1201 SUPERFAMILY WW domain 17 55 IPR036020 GO:0005515
Gso15g1141 1201 Pfam DEAD/DEAH box helicase 540 710 IPR011545 GO:0003676|GO:0005524
Gso15g1141 1201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 750 894 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1141 Gso-Chr15 11014390 11022303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1141 504 893 Eukaryotic Initiation Factors Gene Family AT3G19760 33.760 1.82e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1141 K12823 - gmx:100806371 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1141 15 11014390 11022303 Gso9g0266 9 2523157 2530249 GST