Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1131 ATGTATCTGTTGAATGCACATGCTGTTGGGTCTCTGGTCCGGTTAGGGCATTTGGCGCGGGATGCAAACAAATCTGGGACCTTAAATCACCAATCCAATCCCAATCAATTCATTTTCCTCCAATTCCAATTAAGGTTTCTTCCTCTTTTTCGTTCTCTCTCTCTCTTTTCTCACTATTTCCTCGCCGATATCTCACAAATTCCGCTCTTAGGGTTTCGTAGAACAAACCAAAATTCAATTGTTTTAGCTGAGAGTGTTTTTGATCTACACGCGATGGGTGCTCCGAAGCAGAAATGGACTGCAGAAGAGGAACAAGCACTTAAAGCTGGAGTTGTCAAGCACGGTGTTGGTAAATGGCGCACCATACTGAAGGATCCAGAGTTTAGTGGTGTCTTATACCTGCGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGCGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTATCAGTCAGAAGGGTGCATCAGGTCCCGAGACAGGATGAGAACTCCATGGCTATCACTCCTGTTGTTCCAAGTGACGAAGAGATTGTTGATGTTAAGCCTCTTCAAGTTTCTAGAGATATTGTGCATATTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAGCTTATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTTATAGAGGACCAATATTGGGCACTGCCAGGCTTAAAAAGTATGTTGTCTGCAAAATTAAAGTTTTTGACAGCAAGTGGAAAACTGATCAAGGTAAATCGCAAGTATAGAATTGCACCTATAGCAGCATATTCTGACAGAAGAAGAAACTCATCCATGCTATATTTGAAAGGGAGGCAGAAAGCCTCTATGAAAATTGACAGGGATGAGACCAACATCCTTACTAGATCTCAGATAGATTTAGAGTTAGAAAAGATAAGGTCTATGACTCCACAAGAGGCAGCTGCATTTGCTGCCCGAGCAGTTGCTGAAGCAGAAGCCGCCATTGCAGAAGCAGAGGAGGCAGCAAAGGAGGCTGAGGCAGCAGAAGCTGATGCGGAGGCTGCACAAGCTTTTGCAGATGCTACAACGAAATCAGCGAAAGGGAGAAAATCCCCAAAGAGGATCCATACTTAA 1173 0.4331 MYLLNAHAVGSLVRLGHLARDANKSGTLNHQSNPNQFIFLQFQLRFLPLFRSLSLFSHYFLADISQIPLLGFRRTNQNSIVLAESVFDLHAMGAPKQKWTAEEEQALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSVRRVHQVPRQDENSMAITPVVPSDEEIVDVKPLQVSRDIVHIPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWALPGLKSMLSAKLKFLTASGKLIKVNRKYRIAPIAAYSDRRRNSSMLYLKGRQKASMKIDRDETNILTRSQIDLELEKIRSMTPQEAAAFAARAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFADATTKSAKGRKSPKRIHT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1131 390 Gene3D - 208 287 IPR036388 -
Gso15g1131 390 Pfam linker histone H1 and H5 family 214 272 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso15g1131 390 Coils Coil 334 371 - -
Gso15g1131 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 124 IPR017930 -
Gso15g1131 390 SUPERFAMILY Homeodomain-like 93 162 IPR009057 -
Gso15g1131 390 SMART h15plus2 209 274 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso15g1131 390 PANTHER SINGLE MYB HISTONE 4 92 386 IPR044597 GO:0003691
Gso15g1131 390 SMART sant 95 150 IPR001005 -
Gso15g1131 390 Pfam Myb-like DNA-binding domain 96 147 IPR001005 -
Gso15g1131 390 Gene3D - 92 150 - -
Gso15g1131 390 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 211 279 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso15g1131 390 SUPERFAMILY "Winged helix" DNA-binding domain 209 288 IPR036390 -
Gso15g1131 390 MobiDBLite consensus disorder prediction 353 390 - -
Gso15g1131 390 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 92 386 - -
Gso15g1131 390 CDD SANT_TRF 97 147 - -
Gso15g1131 390 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1131 Gso-Chr15 10847169 10852526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1131 92 328 Single Myb Histone (SMH) Gene Family AT1G49950 61.983 7.15e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso15g1131 Linker_histone 7.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1131 K09422 - gmx:100780698 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1131 15 10847169 10852526 Gso9g0252 9 2372689 2378516 GST