Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1123 ATGGCAGGAAACATGGGGTGGGGTGTGATAGAAGAGGAGGGATGGAGGAAGGGACCTTGGACTTCTGAGGAGGACAGATTGCTCATTCTGTATGTCAAGTTCCATGGTGAGGGCAGATGGAACTCTGCTGCTAGGCTTGCAGGACTAAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGGCCAGACCTCGAGAAGGGTCAAATAACACCACAAGAAGAAAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGCAGGACTCACTTCAAGAAAAAGATAAGGGCTCACTTCAGCTAA 375 0.4667 MAGNMGWGVIEEEGWRKGPWTSEEDRLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYLRPDLEKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYCRTHFKKKIRAHFS* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1123 124 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso15g1123 124 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso15g1123 124 PANTHER MYB TRANSCRIPTION FACTOR 1 120 - -
Gso15g1123 124 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Gso15g1123 124 Gene3D - 17 69 - -
Gso15g1123 124 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 120 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso15g1123 124 CDD SANT 19 64 IPR001005 -
Gso15g1123 124 SMART sant 69 117 IPR001005 -
Gso15g1123 124 SMART sant 16 66 IPR001005 -
Gso15g1123 124 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Gso15g1123 124 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso15g1123 124 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso15g1123 124 Gene3D - 74 123 - -
Gso15g1123 124 CDD SANT 74 115 IPR001005 -
Gso15g1123 124 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1123 Gso-Chr15 10773340 10774126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1123 12 121 MYB Transcription Factor Family AT3G24310 87.273 3.75e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g1123 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1123 K09422 - gmx:100801606 268.47