Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1110 ATGGATTCTTCAATGGCAAGTGTTGGTGGCTCTGGTGATGAAGGCTCTGACAACTTCAACCAGGGAAGAAGACCCTCCTACAAACGTCTCACTTCTGCTCAAACAGCCAGACTTGAAAGATTCATCAAGGATTGCCCACACCCCGACGAAGCCCAACGACGTCAATTAGCTTCTGAGATTGGGCTTGAGACTAAACAAGTAAAGTTTTGGTTTCAGAATAAGAGGACCCAAATCAAGCATGAGAAAGTGTCTAGCCTTCTTGCAAGGTACTTGGAGAAACAAATGTCACCGCCTGAGTTCCAACAGGTTTTTAATATTCCTATCATAGGATCAAGTTCACATGCTCCAAAACTTGAAAATTCATCACTAAACTATGAAATTGGTGGAAGTTCAAGTCATGGTCCAAGTCTTTATGGTATGCAAATTATGGATGGTCATGACCATAACTTAATGGGAAGTGAAGGTATAGAGAAGACCCTGATGTTGAAGGTTGCTGCTTCCGCAATGGAGGAATTGGTTAGGCTTATTCGGATTAATGAGCCCTGTTGGATCAAGTCTTCAACTCAAGATGGACAGCTCATTCTTCAGCATGAAAATTATGAGAAAATGTTCCCAAGGACCAATAATTTCAAAGGTGTCAATCTGCGTGTAGAAGCAACAAAAGATTCAGGAATAGTGAGCATTAATAGCATTCAACTAGTTGACATGTTTCTGGATTCGGACAAATGGATTAATTTGTTCCCAACAATTGTTACAAAAGCAAAAACAATAAAGGTACTTGAAAATGGTTTGGTAGGAAGTCGAAGTGGAGCCTTGCAGCTGATGTTTGAACAAATGCATGTTCTTTCACCTTTGGTGCAACCTCGCGAGTTTCAATTCCTTCGCTATTGTGAGCAAATTGAAGAAGGTGTATGGGTGATAGCAGATGTGTCATTTGATTCCTTTCGACAAAAAACCTCTTTTTTTCACTCTTGGAGACATCCCTCTGGATGCATGATTCAAGAAATGCCTAATGGTTGTTCCATGGTTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACTCATCAGCTATACAAAGACCTTATTGGTACAGGAATTGCATACGGAACAGAAAGATGGATTATGGAACTTCAAAGAATTGGCGAGAGATTTGCTTGCTTTTATGTTGAAAGGATACCTATTCAAGACTCTGGAGGAGTGATCAATTCTCTTGAAGGAAGGAGGAGTGTGATGAATTTTTGTCATCGTATGATCAAAGTCTTTTGTGAAAGTTTAACCATGTCAGGTAACTTGGACTTCCCACTTTTGAAAATGGAGAACAATAGCGGGGTGAGGGTTTCTATTCGCAAAAACAGAAACCACCTTGGTCAACCAAAGGGCGTGATTGTTGTAGCTGCTACCTCCATTTGGCTTCCTCTCCATTATATGAAAGTTTTTGAGTTCTTGACAGATGATAGAAGACGTGCTCAGTGGGATGTTCTTTGCTGTGGAAATAACGCGAACAAGGTTGCACACATCTCAAATGGAATTCATCCTGGCAATTGCATATCTATTTCTCGGCCATTCATCCCTAGCGAGAACAATGCACTGATTCTTCAAGAGAGTTTCACAACTCCCATGGGATCGTATGTTGTATATGCTCCAACCGACGTAGCAAGTATGATTTCGGCCATAAACGGAGAAGACTCTTCAATGCTACCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAGCTTTGGAAGCATTTAACAGTTCAGATATTGAAAGATTAGGAGGCTCATTGCTGACTGTGGCTTTCCAAATACTTGCTTCAAGTCCAGATGGAATCAATATGCCAAACATGGAATCTGTGGCAGCTGTGAACTCCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTGAATTGCAACAACTTGGAGTGA 1953 0.4101 MDSSMASVGGSGDEGSDNFNQGRRPSYKRLTSAQTARLERFIKDCPHPDEAQRRQLASEIGLETKQVKFWFQNKRTQIKHEKVSSLLARYLEKQMSPPEFQQVFNIPIIGSSSHAPKLENSSLNYEIGGSSSHGPSLYGMQIMDGHDHNLMGSEGIEKTLMLKVAASAMEELVRLIRINEPCWIKSSTQDGQLILQHENYEKMFPRTNNFKGVNLRVEATKDSGIVSINSIQLVDMFLDSDKWINLFPTIVTKAKTIKVLENGLVGSRSGALQLMFEQMHVLSPLVQPREFQFLRYCEQIEEGVWVIADVSFDSFRQKTSFFHSWRHPSGCMIQEMPNGCSMVTWVEHVEVDDKIQTHQLYKDLIGTGIAYGTERWIMELQRIGERFACFYVERIPIQDSGGVINSLEGRRSVMNFCHRMIKVFCESLTMSGNLDFPLLKMENNSGVRVSIRKNRNHLGQPKGVIVVAATSIWLPLHYMKVFEFLTDDRRRAQWDVLCCGNNANKVAHISNGIHPGNCISISRPFIPSENNALILQESFTTPMGSYVVYAPTDVASMISAINGEDSSMLPVLPSGFVISADGEPNAALEAFNSSDIERLGGSLLTVAFQILASSPDGINMPNMESVAAVNSLLTSTILKVKDALNCNNLE* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1110 650 SUPERFAMILY Bet v1-like 409 610 - -
Gso15g1110 650 MobiDBLite consensus disorder prediction 1 30 - -
Gso15g1110 650 SUPERFAMILY Homeodomain-like 9 81 IPR009057 -
Gso15g1110 650 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Gso15g1110 650 Gene3D - 162 365 IPR023393 -
Gso15g1110 650 SMART START_1 163 386 IPR002913 GO:0008289
Gso15g1110 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 18 646 - -
Gso15g1110 650 ProSiteProfiles START domain profile. 154 389 IPR002913 GO:0008289
Gso15g1110 650 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 646 IPR042160 -
Gso15g1110 650 Gene3D - 12 88 - -
Gso15g1110 650 Pfam START domain 164 385 IPR002913 GO:0008289
Gso15g1110 650 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Gso15g1110 650 CDD homeodomain 23 82 IPR001356 GO:0003677
Gso15g1110 650 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Gso15g1110 650 SUPERFAMILY Bet v1-like 157 387 - -
Gso15g1110 650 SMART HOX_1 23 85 IPR001356 GO:0003677
Gso15g1110 650 CDD START_ArGLABRA2_like 158 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1110 Gso-Chr15 10604174 10610434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1110 23 645 Homeobox Transcription Factor Family AT1G73360 40.767 1.93e-166 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso15g1110 START 1.6e-35 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1110 K09338 - gmx:100795753 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1110 15 10604174 10610434 Gso9g0225 9 2093766 2099985 GST