Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1096 ATGGAACTTGCAAGACCTGCCTCAAGTAGAAGAAAATTGAAAGATTTATTGCTTCAGAGTGATAATCGTCTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCTGCCAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGAAGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGATTGGTCAGAGGATGAAATAGATGCAATGATGGAAGTTGGGGGAAATGCTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAATTCATACGGTCAAAATATGAATTACAAGAATTTCTGAAACCGAGTTTGCGCATTGTGTCTGGAAAAAGCAGTCTACAATCAAGTTCTGCAAAAAGTAGTTTTATGGACAGTTTTAAAAGTACTGGTAGTTCACAGAGAATGGAAGGTATGGTGGAATTTATTGGAATGTTGAAGGTGAAAGTGATTAAAGGAACAAATTTAGCTATCAGAGATATAAAGTCAAGTGATCCGTATGTTGTTTTGAGCCTTGGCCAGCAGACTGTCCAGACAACTATAATAAGGAGTAACTTGAATCCAGTCTGGAATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATGCTGGAATGTTTGGTAATATGCAGATAGGAAAATGGTTAAAATCAGATGACAATGCCCTTATTGAGGATAGCACAGTCAATATTGTTGATGGTAAGGTCAAACAAATGATGTCACTCAAGCTCCAGGATGTTGAATCTGGAGAATTAGATCTGGAACTCGAGTGGATTCCTCTTGAGCAATAG 975 0.3836 MELARPASSRRKLKDLLLQSDNRLCADCNAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDAGHEQRSKFIRSKYELQEFLKPSLRIVSGKSSLQSSSAKSSFMDSFKSTGSSQRMEGMVEFIGMLKVKVIKGTNLAIRDIKSSDPYVVLSLGQQTVQTTIIRSNLNPVWNEEYMLSVPEHYGQMKLKVFDHDTFSADDIMGEADIDLQSLITSAMAFGDAGMFGNMQIGKWLKSDDNALIEDSTVNIVDGKVKQMMSLKLQDVESGELDLELEWIPLEQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1096 324 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Gso15g1096 324 Gene3D C2 domain 166 324 IPR035892 -
Gso15g1096 324 ProSiteProfiles C2 domain profile. 149 265 IPR000008 -
Gso15g1096 324 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Gso15g1096 324 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Gso15g1096 324 SMART C2_3c 169 264 IPR000008 -
Gso15g1096 324 CDD ArfGap 13 119 - -
Gso15g1096 324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 149 258 IPR035892 -
Gso15g1096 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 324 - -
Gso15g1096 324 Pfam C2 domain 169 258 IPR000008 -
Gso15g1096 324 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Gso15g1096 324 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Gso15g1096 324 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Gso15g1096 324 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Gso15g1096 324 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 124 IPR001164 GO:0005096
Gso15g1096 324 CDD C2_ArfGAP 167 311 - -
Gso15g1096 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 324 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1096 Gso-Chr15 10462842 10473899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1096 3 324 C2H2 Transcription Factor Family AT4G21160 72.121 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1096 K12486 - gmx:100810806 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1096 15 10462842 10473899 Gso15g1096 15 10462842 10473899 ECH
Gso15g1096 15 10462842 10473899 Gso9g0210 9 1934114 1939938 GST